PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV37129.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | B3 | ||||||||
Protein Properties | Length: 834aa MW: 92317.5 Da PI: 7.2952 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.7 | 8.8e-18 | 297 | 396 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k lt sd+++ grlvlpkk+ae++ ++++e+ l ++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++l ++ KZV37129.1 297 FEKLLTASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLEVRDVKGKEWVFQFRFwpNNNSRMYVLE-GITPCLQSLQLQAGDTVTFSRIE-PEGKLIMG 393 89**************************555566678***************9989999999***9.********************887.55555555 PP EE- CS B3 96 vfr 98 ++ KZV37129.1 394 CRK 396 554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-28 | 293 | 399 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-19 | 294 | 391 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.18E-22 | 295 | 396 | No hit | No description |
PROSITE profile | PS50863 | 10.814 | 297 | 398 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-21 | 297 | 397 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-15 | 297 | 396 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 12.804 | 567 | 617 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 5.9E-10 | 572 | 614 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 834 aa Download sequence Send to blast |
MSTSSSTGFC FNFNCRDGSE KWRRGWPRRT GDYAHLCDRC ASAYEEGKFC ETFHLDASGW 60 RSCESCGKTP NPAWPPPSRL LPLQPERMKD LSLKALNATV ASDPEPWDLA LNLFSGFTMP 120 SNVQPRLPFE IGLLGGIDKL RICQRLSTAS REKKDNPIEG LVNRKPGIST IDSSVNGASY 180 KEQSHLSIND FGPITFPKND SAVVGSCMAA ISSKSEANDT RLSAIFSQPC TPSVQVGKQI 240 WNHNRVGSSS EVQPHDGKSR GDDHGQGQLL PRYRPQITDE ELQQISTDSN SVITPLFEKL 300 LTASDAGRIG RLVLPKKCAE AYFPPISQPE GLPLEVRDVK GKEWVFQFRF WPNNNSRMYV 360 LEGITPCLQS LQLQAGDTVT FSRIEPEGKL IMGCRKASSI PSFDQVRPPS PPFLNLGDEI 420 SLFGNNASVL VDDSIKIRSG EGSLVSGNLN DKSRQRFPLI NQDAKADPKS AGLTVKSTFN 480 AKKMLETKPM AHNNRKNSTS GTKSKRLRIE KEDIVELKLT WEEAQLLMRP PPKIAPSVFV 540 IERFEIEEFE EAAPIIGRPT IPVVDHLGLK SQWAQCDECF KWRKVPEDAL LSSRWTCSEN 600 VWDLGRSLCS ATEELSADQL DELLPTISKV SSEKNKATED NSDLFVGLEG LDALANLAIQ 660 GEGESLPHSS PTRTKHPRHK PGCSCIVCIQ PPSGKGLKHK QSCECAVCSS LRRRFRTLME 720 RREKKQMEKE TEALQHQQSP KQLLHINAHP SNKTENSDVN VEDLVTGGCV NEHIGKKRTV 780 VPLKGQIDLN VHPEREEELS PGSNSVAMKC FSMGTTQEDT GGQHLPTDTA VLGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 8e-63 | 275 | 399 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV37129.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096215.1 | 0.0 | B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A2Z7BRR0 | 0.0 | A0A2Z7BRR0_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M01204.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7128 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-142 | HSI2-like 1 |