PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV36922.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 326aa    MW: 35459.4 Da    PI: 8.2092
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV36922.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.3e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+  l+ +v ++G+g W+tI +  +       R+  ++k++w+++
       KZV36922.1  5 KQKWTAEEEAALKAGVLKHGPGKWRTILKDPQfsgvlYLRSNVDLKDKWRNL 56
                     79***********************************88***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.238158IPR017930Myb domain
SuperFamilySSF466892.54E-15267IPR009057Homeodomain-like
SMARTSM007177.3E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-13456IPR009057Homeodomain-like
PfamPF002497.3E-9556IPR001005SANT/Myb domain
CDDcd116601.68E-18656No hitNo description
SMARTSM005264.6E-9106183IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.023115188IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.2E-15119196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-14124188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.6E-8125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKHGPGKWRT ILKDPQFSGV LYLRSNVDLK DKWRNLSVMT  60
NGWGSRERTR PTMKRMHFST KHGDNSAALS SLSQSDEELP SARPLATSGG SSPNDGSKRC  120
VMRLDNLIME AINNLREPGG SNKTTIASYI EDQYWAPPNF KRILSAKLKH LAATGKLIKM  180
KRKYRIAAIS TLSERRNPAA PAVEGRQKIS PKIDRDDSIT NSKSQIDLEL VDMSNMTPQE  240
AAAAAALAVA EAEAAMAEAE AASLEADAAE ADAEAAQAFA EVALKTLKGR STPGMGDNVL  300
AFDMILFFPE CTDDSGMMEF VTVIMQ
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV36922.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088080.11e-143telomere repeat-binding factor 1 isoform X1
RefseqXP_020552115.11e-143telomere repeat-binding factor 1 isoform X1
SwissprotQ8VWK42e-90TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A2Z7BQL70.0A0A2Z7BQL7_9LAMI; Telomere repeat-binding factor 1-like
STRINGMigut.B00451.1.p1e-129(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-91telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]