PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

M-type_MADS

Protein Properties

Length: 64aa MW: 7116.42 Da PI: 10.4833

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV36495.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.1	4.8e-28	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ri+n+ nrqvtf kR++g+lKKA+ELSvLCd eva+iifss+gkl+ + KZV36495.1 9 ERISNEVNRQVTFGKRKKGLLKKASELSVLCDSEVALIIFSSEGKLFHF 57 69********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.651	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.0E-34	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-26	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-27	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 64 aa Download sequence Send to blast
MGRGKVILER ISNEVNRQVT FGKRKKGLLK KASELSVLCD SEVALIIFSS EGKLFHFGSV 60 GYML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	2e-21	1	61	1	61	MEF2 CHIMERA
6bz1_B	2e-21	1	61	1	61	MEF2 CHIMERA
6bz1_C	2e-21	1	61	1	61	MEF2 CHIMERA
6bz1_D	2e-21	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV36495.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439145.1	4e-26	PREDICTED: MADS-box transcription factor 17-like
Refseq	XP_011651126.1	3e-26	PREDICTED: MADS-box transcription factor 6-like
Refseq	XP_029119876.1	2e-26	MADS-box transcription factor 6-like
Swissprot	P29386	7e-26	AGL6_ARATH; Agamous-like MADS-box protein AGL6
TrEMBL	A0A2Z7BWR1	4e-37	A0A2Z7BWR1_9LAMI; MADS-box transcription factor 17-like
STRING	XP_004150309.1	4e-26	(Cucumis sativus)
STRING	XP_004167097.1	4e-26	(Cucumis sativus)
STRING	ORGLA02G0240800.1	1e-26	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	3e-28	AGAMOUS-like 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Dreni L,Zhang D Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes. J. Exp. Bot., 2016. 67(6): p. 1625-38 [PMID:26956504]