PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 289aa MW: 32070.3 Da PI: 8.4622

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV36367.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	227	249	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ L+ H + H KZV36367.1 227 VCPRCNLRFSSVGALVDHVEKvH 249 6*****************99888 PP
2	zf-C2H2	16.9	1.7e-05	261	283	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ L+ H + H KZV36367.1 261 VCPKCSKGFRDPVALVEHVEReH 283 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	9.81E-12	7	52	No hit	No description
PROSITE profile	PS51039	7.491	10	59	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	1.8E-9	11	53	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.0031	13	52	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	1.1E-12	13	51	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	4.97E-9	55	145	No hit	No description
Gene3D	G3DSA:4.10.1110.10	7.6E-10	90	155	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS51039	8.039	98	151	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.07	101	142	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	9.2E-8	101	141	IPR000058	Zinc finger, AN1-type
SMART	SM00355	0.15	226	249	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	228	249	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.6	260	283	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.787	260	288	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	262	283	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MGTPAFPNLG KHCSVDDCHQ IDFLPFTCDC CNRVFCLDHR SYGRHQCPKA NKNDVTVVVC 60 PLCAKGVRLI HNEDPNITWE SHVNIECDPS NYENTTKKRK CPVPGCREFL TFSNSIKCRD 120 CTLDHCLKHR FGPDHKCPGP KKPEPSYQFM GFLNRSQKED NKRGSVASSS NWASSFLKAA 180 SSVRATAEAG IARLSNEVNQ ALSKDGAVQS SNGSTSQHRR VSGQVEVCPR CNLRFSSVGA 240 LVDHVEKVHE RNGVMKATLD VCPKCSKGFR DPVALVEHVE REHRGVSKS

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV36367.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075237.1	1e-166	zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
Swissprot	Q0D5B9	1e-120	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	A0A2Z7BVT8	0.0	A0A2Z7BVT8_9LAMI; Uncharacterized protein
STRING	Migut.J01765.1.p	1e-151	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5311	22	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-120	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]