PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV35892.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

HB-other

Protein Properties

Length: 968aa MW: 108488 Da PI: 9.6091

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV35892.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.3	4e-06	70	125	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +r+R ++++ ++ L+ +F + +s++e +e++++ g+t +qV+ +F +R + + KZV35892.1 70 KRPRDLLNPKAVKYLQFVFSIKDAVSKRETREISAQFGVTASQVREFFTGQRSRVR 125 799*************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.3E-5	66	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.491	67	127	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-6	70	129	IPR009057	Homeodomain-like
CDD	cd00086	0.0049	70	126	No hit	No description
Gene3D	G3DSA:1.20.930.10	3.0E-5	225	316	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	7.32E-6	226	316	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence Send to blast
MESSKDDQLE LVLSKRSATS YLELLEAQND LFHSQIGKLQ NIVATQCKLT GINPLSQEMA 60 AGALSIKIGK RPRDLLNPKA VKYLQFVFSI KDAVSKRETR EISAQFGVTA SQVREFFTGQ 120 RSRVRNFVRL SGKNADRSRT CDESRDGTPS TSYPNVSAEP VPIDTVAPSS HEGPSRPMQT 180 EVVPLGKEKS DRHFMDNIFR LMRSEESFSG QDKLLEWILQ IENISVLHWF LVQGGVMILA 240 TWLSQAAVEE QTSVLNNVLK VLCHLPLRKA LPVHMSAILQ SVNKLRFYRA SDISNRARYL 300 LSMWSKMFAS SQSSNKLNGN KSVGDGQDEM LLKQRQVQIT CICRKRCFKY IKEVMDNEIW 360 DSNVDYSEAD LRITNGNANS FRKLESPQKL KLLTPSGEES NKRRGVVSSQ IRERRKVKLV 420 EPPGQRIVAN SPHIVKSTPA TYSRPLSADD IQKAKMRTQF MQSKYSKTDD NSQVKSDSPH 480 NCSTSQSNVP QSIPKPVRAD LDERKELDNA APKVSNIRET THSNLEEPPL KKVKRIPFTW 540 RTPREVKLME SWLVGIGESS KEVEVQKNRI RREREITYRT NQEIPSNPRE PWDREMDYDD 600 TLTPEIPIEQ LPDVEPLETP QASVNGHEGS VDAVSTTLSG AGGSVPEPDL ELLAELLKNP 660 EIVYALTSGQ AGDLSSNETC RLLDMIKVNG MTSLSNFAGS GAKGDNKVEV SLPSPTPSSD 720 LVPNGVKRDL TRNPFSRQQT TAKGNVFQSP ETAHIPGPSV FVSHPSPASS LQSTLQSQQC 780 TNILMHNKSS NVHHLAPEML LKQNTAINSN RASTSLLRVE NFGNINMSPA SLGISSTRLL 840 PSPTPTPLHP QLPYTRESTI PHSLSARPGY ETINYHQKNP TINNVGIDGP VHAALPARTW 900 ERNGRAVRPE YESWSPENSQ HRHFEYIPGQ NHPEPRVDIR RERAMPRNSV QSSGFRDQRM 960 SGVRDYRR

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence Send to blast

MESSKDDQLE LVLSKRSATS YLELLEAQND LFHSQIGKLQ NIVATQCKLT GINPLSQEMA  60
AGALSIKIGK RPRDLLNPKA VKYLQFVFSI KDAVSKRETR EISAQFGVTA SQVREFFTGQ  120
RSRVRNFVRL SGKNADRSRT CDESRDGTPS TSYPNVSAEP VPIDTVAPSS HEGPSRPMQT  180
EVVPLGKEKS DRHFMDNIFR LMRSEESFSG QDKLLEWILQ IENISVLHWF LVQGGVMILA  240
TWLSQAAVEE QTSVLNNVLK VLCHLPLRKA LPVHMSAILQ SVNKLRFYRA SDISNRARYL  300
LSMWSKMFAS SQSSNKLNGN KSVGDGQDEM LLKQRQVQIT CICRKRCFKY IKEVMDNEIW  360
DSNVDYSEAD LRITNGNANS FRKLESPQKL KLLTPSGEES NKRRGVVSSQ IRERRKVKLV  420
EPPGQRIVAN SPHIVKSTPA TYSRPLSADD IQKAKMRTQF MQSKYSKTDD NSQVKSDSPH  480
NCSTSQSNVP QSIPKPVRAD LDERKELDNA APKVSNIRET THSNLEEPPL KKVKRIPFTW  540
RTPREVKLME SWLVGIGESS KEVEVQKNRI RREREITYRT NQEIPSNPRE PWDREMDYDD  600
TLTPEIPIEQ LPDVEPLETP QASVNGHEGS VDAVSTTLSG AGGSVPEPDL ELLAELLKNP  660
EIVYALTSGQ AGDLSSNETC RLLDMIKVNG MTSLSNFAGS GAKGDNKVEV SLPSPTPSSD  720
LVPNGVKRDL TRNPFSRQQT TAKGNVFQSP ETAHIPGPSV FVSHPSPASS LQSTLQSQQC  780
TNILMHNKSS NVHHLAPEML LKQNTAINSN RASTSLLRVE NFGNINMSPA SLGISSTRLL  840
PSPTPTPLHP QLPYTRESTI PHSLSARPGY ETINYHQKNP TINNVGIDGP VHAALPARTW  900
ERNGRAVRPE YESWSPENSQ HRHFEYIPGQ NHPEPRVDIR RERAMPRNSV QSSGFRDQRM  960
SGVRDYRR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV35892.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011079715.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-144	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2Z7BMK6	0.0	A0A2Z7BMK6_9LAMI; Homeodomain-like superfamily protein
STRING	Migut.D00183.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5240	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-146	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]