PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV35200.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 336aa    MW: 37273.2 Da    PI: 4.4918
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV35200.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.4e-19127176255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +++GVr+++ +g+W+AeIrdps    r  r +lg+++taeeAa  +++a+ +l+g
  KZV35200.1 127 KFRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 176
                 89*******.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.4E-30126184IPR001471AP2/ERF domain
SMARTSM003807.1E-37127190IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21127184IPR016177DNA-binding domain
PROSITE profilePS5103223.723127184IPR001471AP2/ERF domain
CDDcd000183.13E-32127183No hitNo description
PfamPF008471.5E-12127176IPR001471AP2/ERF domain
PRINTSPR003673.6E-10128139IPR001471AP2/ERF domain
PRINTSPR003673.6E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSIMMPQEGK TMLSSSVKYS EHVSQTTVVS KPEETTTTIF PKTIRVSFTD PDATDSSSDE  60
EEGTFVKRRR VRKFINEVRI QPSSSRYNES VKGNAKVTRP SVAVMKRKKN SGRKIEGRAP  120
EVGNVRKFRG VRQRPWGKWA AEIRDPSRRV RLWLGTYDTA EEAAMVYDHA AIQLRGPDAL  180
TNFSAPPAVD NKTSSGYNSG EDSNNNAKSP KSILLFASAA DSQAEAEAEA EAEVESCSAN  240
DALSTKEIED ENFSDSFIFP PSDDDMFREF ENPLPPPDLF EQTALSDDIF GSDFDRCTDM  300
LIGSTLDLGF DFGFGPVDDY FQDFGDIFGS DPLKAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19126183159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16670KRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV35200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080873.11e-132ethylene-responsive transcription factor CRF2
TrEMBLA0A2Z7BSL80.0A0A2Z7BSL8_9LAMI; Uncharacterized protein
STRINGMigut.E01228.1.p1e-113(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.19e-48cytokinin response factor 4