PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV35094.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 498aa    MW: 54897.6 Da    PI: 9.2906
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV35094.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-056183123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C++C+k F r  nL+ H r H
  KZV35094.1 61 FICEICNKGFQRDQNLQLHRRGH 83
                89*******************88 PP
2zf-C2H212.80.00037138160123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H +t+
  KZV35094.1 138 WKCEKCSKKYAVQSDWKAHSKTC 160
                 58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.85E-76083No hitNo description
SMARTSM003550.0226183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8456183IPR007087Zinc finger, C2H2
PfamPF121716.0E-56183IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355110103133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4125159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.85E-7133158No hitNo description
SMARTSM00355140138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MSGDVFSVPI SSTKIFPQEL EQNPNPKPSS NKKKRNLPGT PDPDAEVIAL SPNTLMAKNR  60
FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRANKDQIKK KVYICPEKTC VHHDPARALG  120
DLTGVKKHFS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKTC GTREYKCDCG TLFSRRDSFI  180
THRAFCDALA EENSRITTSA PNLNFSNDSN SDMMNSQLNR NSLLDHHQQK PRLSLWLDLQ  240
TNSQLINSNP IDHNSNLYIP SNNSPSFPDQ MMQMASNFGP NYANLSLSPL PPPQNQLKEE  300
TIMNKGSCGS TLMADSLASL YNSDQNQTNT SSKSSNPIPM SATALLQKAA QMGSTKSHQS  360
LFGNSTTVGL MNSSSSSSAS PSANTLTFNN PFTQNRSELH QVFSKNPDQV NVNLAMKETS  420
ADKMMNFSSC TSTLMNLDSG LRGVHQSSLT RDFLGMGGGD DSGGGGGGPM FFPQELANLA  480
SMSSAMVMSH FSSNHQLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-37134202371Zinc finger protein JACKDAW
5b3h_F4e-37134202371Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV35094.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094681.10.0protein indeterminate-domain 9
SwissprotQ9SCQ61e-114IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2Z7BL910.0A0A2Z7BL91_9LAMI; Uncharacterized protein
STRINGMigut.J00556.1.p1e-178(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-96C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]