PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV34990.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 663aa    MW: 73445.7 Da    PI: 9.4162
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV34990.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.7e-07553602147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+ lG+g+W+ + ++      +Rt  ++k++w ++
       KZV34990.1 553 RRPFSVSEVEALVEAVENLGTGRWRDVKKRAFenaDHRTYVDLKDKWKTL 602
                      678999************************9999*9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.02E-7359451IPR029071Ubiquitin-related domain
PROSITE profilePS500538.938362432IPR000626Ubiquitin domain
PROSITE profilePS5129416.393548607IPR017930Myb domain
SMARTSM007171.7E-7552605IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10553603IPR009057Homeodomain-like
SuperFamilySSF466893.67E-15554635IPR009057Homeodomain-like
CDDcd116601.58E-15554604No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000781Cellular Componentchromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MVSKKRLNDN FNGFQVPVVP RAPRSIRRKG RTYKKLVEDN ELCPFELLAA VAGKLLQESE  60
SSACSNAGEG KGQLGIGQYG LVKGQHGNHL KSEGFDHRSC AESAFVPEVE VQDCNLLSNL  120
EGFPSEGNAP ILECSSVLAG SGLLKNVNSD IKLGFNEVKA DKMENGPESQ SDDNKNHIND  180
VSVAPTSIVK DPIAESVNTD VLVNADSNVQ LPLYRDPIAG DFLNNHWNNV KLGNSDDDEY  240
SFGCSKSSTK IRSFRPQPWS GNRRIRKILA SKYWKASPKL KDYDVYNTSE RLTSFYRYRK  300
NIYARERYQR APIKKRKLYG HPFTIAYDQE ASGESTSSSP DKRASELPAT VKGHQKVKDS  360
RVKFSIKSFR VPELYIEVPE TTTVGSLKRT VLKAVTTILG GGIRVGVVLQ GKKVRDENRT  420
LQQAGISESC NLDTLGFTLE PSFTNPSSMT PKKLPLALPY DADQQFPRSP ITADFGSGIS  480
SSSDIPVVTK LDSSVDNRKP ISSLETPTNE LTDGSSPDSK ALVPVDPMNV ESLALVPVDP  540
KHKRGEVSQR RTRRPFSVSE VEALVEAVEN LGTGRWRDVK KRAFENADHR TYVDLKDKWK  600
TLVHTASISP QQRRGEPVPQ DLLNRVLSAH SYWSQHQCKQ QHGKNSVERL KIVDGVHGEM  660
VGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-595376631121Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308316QRAPIKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV34990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085026.10.0telomere repeat-binding protein 4
TrEMBLA0A2Z7BS130.0A0A2Z7BS13_9LAMI; Telomere repeat-binding protein 4-like
STRINGMigut.F00779.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-101TRF-like 2