PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV34778.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 859aa    MW: 96984.3 Da    PI: 8.85
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV34778.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-15455499147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE++++++a k++G   W+ I +++g ++t+ q++s+ qk+
       KZV34778.1 455 REKWTEEEHQRFLEALKLYGRA-WRQIEEHVG-TKTAIQIRSHAQKF 499
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF149685.8E-10214390IPR028015Coiled-coil domain-containing protein 84
SuperFamilySSF466891.79E-15449504IPR009057Homeodomain-like
PROSITE profilePS5129420.946450504IPR017930Myb domain
TIGRFAMsTIGR015579.5E-17453502IPR006447Myb domain, plants
SMARTSM007171.1E-12454502IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-8454495IPR009057Homeodomain-like
PfamPF002496.7E-13455498IPR001005SANT/Myb domain
CDDcd001678.84E-9457500No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009960Biological Processendosperm development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MDGKKKKMDE QFQFCEVCKL NHNQGRRHIY FPNHKASLRV LLTRFQSKVS GVRSFLRTPT  60
PLRPEHADSS RMWCIFCGCD VLELGSPFEC GNAIEHLASG EHCRRVKRFL EKYGGGMDRV  120
ALFRISEADF NKWEKKCQSL KTVAAKSESV GPVIGPLNNI HNELNPGNVN SFRKNNVNSL  180
NFSFTNDVAP LQRYTNERDQ ISHSELSSMS EIGSSSSLLV DAQVGDKPVL KVSKGWMVDQ  240
HSFNSLNREC SSYGLFCNGS SPQGISMAIG QSKAQAFLTQ IPHIPHEVTE GNVHTGAPPP  300
WFDVSQGNQL SSTQRPELNN LKSPKIRKPS RLNPKRVGAA WAERRKLELE LEKRGEPLTN  360
TFNADWLPNF GRVWQSGTRK ESRKEFLMEH TLSNKEDVKS EKCMSLQPYI SKKMDVSPMV  420
SSQLESVTGQ SRTSLFNGKV NAPKVRKPYT ITKQREKWTE EEHQRFLEAL KLYGRAWRQI  480
EEHVGTKTAI QIRSHAQKFF TKVTRDSSID RERHFNPNEI PPPRPKKKPL HPYPRKADSI  540
TAEAMVSPQP ERSPSSDVTF ANRENLSPTS VLSTVCSEPE IYKACVSPAS CSTDARSAKF  600
LATDNDNEYV TSGITSKEDE DNNYSVKVSS IAVPANNSTT KLEFTSRATF PPDHPSTEES  660
CASIKLFGKT VVVRDLSKES LQIIENSKSL PLDPMDVSLE NNSQTLFQNL YAQTSEYVPI  720
VATPFSLPTE MLKNVSSHME NVFGLSWWYW YQTLVYSHLN LCKLKAAEKA ENPQCAEAFK  780
EDHRKKEPLA GSTNGSIGEE SNAENQDTDT AHSERTSNSS KRECLKGFVP YKRCLAERED  840
KSTMSFLQER ENRRARVCS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV34778.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.13e-39MYB_related family protein