PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV34260.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

Dof

Protein Properties

Length: 492aa MW: 54085.8 Da PI: 7.1485

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV34260.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.2e-39	150	210	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny++sqPr+fCk+C+ryWt+GG++rn+PvG+grrknk+s KZV34260.1 150 PDKILPCPRCNSMDTKFCYYNNYNVSQPRHFCKSCQRYWTAGGTMRNLPVGAGRRKNKNSA 210 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-30	147	207	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-32	152	208	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.658	154	208	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	156	192	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MKDPEIKLFG RKIVLPESGE EYSDEEKRSP VACEEVLGLE FEQLRMYRCL ALFRGLRKLR 60 VAKIAVKDCS CFSSEIREQS SGEISETKSE EKDQTSDAAD EFHDLVPVSE TDDNPKTPSI 120 DEDFVSTNHP KADNEQGDGA STQQKTLKKP DKILPCPRCN SMDTKFCYYN NYNVSQPRHF 180 CKSCQRYWTA GGTMRNLPVG AGRRKNKNSA SNCRHLTISE ALHASMIDGY NGFHQKTFKQ 240 NGTVLSFGPE SPLCKSMVSG LKIEDKSMPN QGSANGDNAD DRSIGSSIKI SSSVANGGEN 300 GLQQHPVVLN INQFQSPLPC IPGFPWQLSW NPAVPLPAIF SPPGFPMPFY PPPYLNYGAP 360 NSWKVPCVSV SPPTVNQNMT SCSLSSPLGK HSRNGELLNP SSSEGEHNVR EKNLDSSIVV 420 PKTLRIDDPE EAAKSSIWAT LGIKYDSTSR KGLFKALQPK CDPKESVANA SPALMQANPA 480 ALSRSINFQE TA

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MKDPEIKLFG RKIVLPESGE EYSDEEKRSP VACEEVLGLE FEQLRMYRCL ALFRGLRKLR  60
VAKIAVKDCS CFSSEIREQS SGEISETKSE EKDQTSDAAD EFHDLVPVSE TDDNPKTPSI  120
DEDFVSTNHP KADNEQGDGA STQQKTLKKP DKILPCPRCN SMDTKFCYYN NYNVSQPRHF  180
CKSCQRYWTA GGTMRNLPVG AGRRKNKNSA SNCRHLTISE ALHASMIDGY NGFHQKTFKQ  240
NGTVLSFGPE SPLCKSMVSG LKIEDKSMPN QGSANGDNAD DRSIGSSIKI SSSVANGGEN  300
GLQQHPVVLN INQFQSPLPC IPGFPWQLSW NPAVPLPAIF SPPGFPMPFY PPPYLNYGAP  360
NSWKVPCVSV SPPTVNQNMT SCSLSSPLGK HSRNGELLNP SSSEGEHNVR EKNLDSSIVV  420
PKTLRIDDPE EAAKSSIWAT LGIKYDSTSR KGLFKALQPK CDPKESVANA SPALMQANPA  480
ALSRSINFQE TA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV34260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087240.1	0.0	cyclic dof factor 1
TrEMBL	A0A2Z7BJ13	0.0	A0A2Z7BJ13_9LAMI; Cyclic dof factor 3-like
STRING	XP_009587736.1	1e-165	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-77	cycling DOF factor 2