PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV33036.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 464aa    MW: 51485.1 Da    PI: 5.6633
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV33036.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS323.83.4e-99924571373
        GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                 lv+lL+++Aea++  +    la+ +L rl+el+sp+  ++m+Rla+yfteAL+  +           + +e+  ++++++laa++l++++sP++kf+h+
  KZV33036.1  92 LVHLLMAAAEALAGASRCreLARVILVRLKELVSPNVgTNMERLASYFTEALHGLIDA--------GKYKEE--HRQTDVLAAFQLLQDMSPYVKFGHF 180
                 68**********986654449***********998865****************9998........333333..35899******************** PP

        GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                 taNqaIleav++++rvHi+D+di++G+QW++L+qaL sR+   +pp+lRiT+v++   g  s  +++etg+rL++fA+++g pf+f+    ++ e++++
  KZV33036.1 181 TANQAILEAVSHDRRVHIVDYDIMEGIQWASLMQALVSRKdgTPPPHLRITAVSRGGGGrcSFGTVQETGRRLTSFAASIGQPFSFHQCRLDAAETFKP 279
                 ****************************************777799*********66559999*************************9999******* PP

        GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErel 289
                 ++Lr+ +gEal++n++l+l ++ ++s ++     ++L+  k+l+P++v++ve+e+   +++ F+ rf+++l++ysa+ dslea++p + + r  vEr++
  KZV33036.1 280 SSLRLVRGEALVINCMLHLPHFNHRSPDSIA---SFLSGSKTLNPRIVTLVEEEMGPtGEQGFVGRFMDSLQHYSAMCDSLEAGFPMHGRSRGLVERVF 375
                 **********************966665555...9*******************998899*************************************** PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                 lg++i   +    ++  ++   + +W ++l   G++p ++s ++ +qakll+  ++ dgyrvee   + l lgWk+r+L+s+S W
  KZV33036.1 376 LGPRIAGSLDRIFRA--HEDGDVCSWGQWLAGIGLSPWSISFSNHCQAKLLIGLYN-DGYRVEELaVNKLALGWKSRRLLSASIW 457
                 *******99877766..6777899*******************************9.******98468899************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.49566438IPR005202Transcription factor GRAS
PfamPF035141.2E-9692457IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MATTTTTGDE GCGWNQWSPV IDWEEFSGGE DDFHNLIDSI MDDHNVVIHQ PYSPDTSEEY  60
RNNLSSPECN TLMSMDEESC GGDTEDCKGL RLVHLLMAAA EALAGASRCR ELARVILVRL  120
KELVSPNVGT NMERLASYFT EALHGLIDAG KYKEEHRQTD VLAAFQLLQD MSPYVKFGHF  180
TANQAILEAV SHDRRVHIVD YDIMEGIQWA SLMQALVSRK DGTPPPHLRI TAVSRGGGGR  240
CSFGTVQETG RRLTSFAASI GQPFSFHQCR LDAAETFKPS SLRLVRGEAL VINCMLHLPH  300
FNHRSPDSIA SFLSGSKTLN PRIVTLVEEE MGPTGEQGFV GRFMDSLQHY SAMCDSLEAG  360
FPMHGRSRGL VERVFLGPRI AGSLDRIFRA HEDGDVCSWG QWLAGIGLSP WSISFSNHCQ  420
AKLLIGLYND GYRVEELAVN KLALGWKSRR LLSASIWCSQ DNDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-4811145835378Protein SCARECROW
5b3h_D1e-4811145835378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV33036.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069635.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2Z7BM490.0A0A2Z7BM49_9LAMI; Uncharacterized protein
STRINGPOPTR_0005s15900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-155GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]