PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV32589.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 349aa    MW: 39914.3 Da    PI: 6.26
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV32589.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000465476323
                ET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                C+   Cgk+F +   L++H   H
  KZV32589.1 54 CSyeGCGKTFIDAGALRKHSHIH 76
                77779**************7766 PP
2zf-C2H2163.4e-0581105123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 y+C+  +Cgk F ++s LkrH   H
  KZV32589.1  81 YVCHydNCGKKFLDSSKLKRHFLIH 105
                 9********************8877 PP
3zf-C2H221.84.9e-07111135123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++Cp   Cgk Fs   nL++H++tH
  KZV32589.1 111 FVCPheGCGKAFSLDFNLRSHMKTH 135
                 89**********************9 PP
4zf-C2H214.50.0001143165323
                 ET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                 Cp   Cgk++ + + Lk+Hi +H
  KZV32589.1 143 CPypECGKRYAHEYKLKNHIASH 165
                 8888*****************96 PP
5zf-C2H213.30.00025203228123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 y Cp   C k + + + L+ H+r+ H
  KZV32589.1 203 YACPyeGCEKAYIHEYKLNLHLRReH 228
                 89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.5E-144778IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.1E-648101No hitNo description
SMARTSM003550.00325276IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7835281IPR007087Zinc finger, C2H2
PROSITE patternPS0002805476IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-1379101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.1781110IPR007087Zinc finger, C2H2
SMARTSM003550.008981105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083105IPR007087Zinc finger, C2H2
SuperFamilySSF576674.6E-1492144No hitNo description
Gene3DG3DSA:3.30.160.603.2E-20102135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.695111140IPR007087Zinc finger, C2H2
SMARTSM003553.1E-4111135IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113135IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.6E-9136167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.328141170IPR007087Zinc finger, C2H2
SMARTSM003550.13141165IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280143166IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-8198226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.41E-5198226No hitNo description
PROSITE profilePS5015710.762203233IPR007087Zinc finger, C2H2
SMARTSM003550.0097203228IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280205228IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVQKSYLTVS QSLNLTHESV LFLEATLKAM KDKTKEPEAV EPEPEPTTEV LFLCSYEGCG  60
KTFIDAGALR KHSHIHGERQ YVCHYDNCGK KFLDSSKLKR HFLIHTGERD FVCPHEGCGK  120
AFSLDFNLRS HMKTHSQENY HLCPYPECGK RYAHEYKLKN HIASHHEKTG VDVIKYTPPV  180
EKPVKTSKSN TGVSGPASSD RPYACPYEGC EKAYIHEYKL NLHLRREHPG HFPDDNAKHN  240
VQANNENEMD EGSDQEAYTA KRGSTKVQKQ SRPKPSLKIP PSKVALRKTS NMSSANLNVV  300
KKPWPVKDEM YDEEDSEETE EERDNLVEGG WRYGENNNDD DEEETEEED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-35451652117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV32589.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022897013.10.0zinc finger transcription factor YY1
SwissprotQ2V3L31e-125YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2Z7BGM60.0A0A2Z7BGM6_9LAMI; Uncharacterized protein
STRINGMigut.B00804.1.p1e-166(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-125C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]