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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV31365.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | CO-like | ||||||||
Protein Properties | Length: 383aa MW: 42642.9 Da PI: 6.2416 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.8 | 1.7e-06 | 5 | 44 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++e++ + +C+++ +lC +C + H+ H++ KZV31365.1 5 CDFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 *****************************65677777765 PP | |||||||
2 | zf-B_box | 18.7 | 3.6e-06 | 46 | 88 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C+++ ++++ C + + lC++C eH g H+++ KZV31365.1 46 LVCERCTSQPAFVRCIEEKISLCQNCDWMEHVGsnishvHKIQ 88 68*****************************888899888886 PP | |||||||
3 | CCT | 56.6 | 9e-20 | 326 | 369 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+ktRkFeKk+rY+sRKa+A+ R R KGrFvk+ KZV31365.1 326 RTDAVKRYKEKKKTRKFEKKVRYASRKARADVRRREKGRFVKAG 369 889**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.485 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.10E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 3.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.66 | 43 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.644 | 326 | 368 | IPR010402 | CCT domain |
Pfam | PF06203 | 9.7E-15 | 326 | 368 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MGYLCDFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSR RHSRTLVCER CTSQPAFVRC 60 IEEKISLCQN CDWMEHVGSN ISHVHKIQAV NSYSGCPSAT ELSAIWWFLL DSTNEKGTGY 120 MSITDDPKHF SGLQQKGNVR DASLETEASD LHSENLDKSA TQMESLSPLL GPKLHNMVQA 180 PVSQFAMPKV FLPERKGKDA FQDNSFHDDF NVDEVDINFK NYEELFGLAL NNSENLFDDE 240 GLFGTKAMSY TAEVSSVGGV NVTLPACSNA ASVDSVISCK TEPNICFTGE ISTTDFQDCG 300 ASSLQIMGEP PWCPPVPESS LPSSSRTDAV KRYKEKKKTR KFEKKVRYAS RKARADVRRR 360 EKGRFVKAGD AYDYDPLIPS RSY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV31365.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100551.1 | 1e-170 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_011100552.1 | 1e-170 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_011100553.1 | 1e-170 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9LUA9 | 1e-119 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A2Z7BBC6 | 0.0 | A0A2Z7BBC6_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M00064.1.p | 1e-153 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-103 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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