PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV30235.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 380aa    MW: 43642.3 Da    PI: 4.6819
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV30235.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.64.7e-34391302102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye ++d++++e++sws+ +nsf+v+d+++fa ++LpkyFkh+nf SFvRQLn+YgF+kv+ ++         weF+ + F kg+++ll++i 
    KZV30235.1  39 FLSKTYEFVDDPSTNEFVSWSRGNNSFIVWDPQTFAMNILPKYFKHNNFCSFVRQLNTYGFRKVDPDK---------WEFASEGFLKGQRHLLKHIV 126
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
    KZV30235.1 127 RRKT 130
                   *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.9E-5535128IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.3E-3735128IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.76E-3335128IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-2939128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-193962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-1990102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MKDSTKEVHV GTSSFVYWDK EELIPQPLDA LLETGPPPFL SKTYEFVDDP STNEFVSWSR  60
GNNSFIVWDP QTFAMNILPK YFKHNNFCSF VRQLNTYGFR KVDPDKWEFA SEGFLKGQRH  120
LLKHIVRRKT QFLSSPTSNN QSLGSCVEVG SFGLDAEIDR LRRDNQVLTM ELVKLRQQQQ  180
TTLSCIKTMD ERLKVTEIKQ KQAMCFLATA IQNPTLVQQI LQQKENKKEL EQVMGYKRRR  240
RLLDHVSTDI GVEELVFDEG ENTNLSTIGN VCFPELGQET EVNAYKDDVG IGQFEDGYLY  300
VKLEPQEYGE IPRFGDLDLE NLALSMQKPQ VSMEPKSLGK VEFRPSDEGF WKELITERID  360
EIGTLGVEEG GDDMIDHQLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-233713027131Heat shock factor protein 1
5d5v_B1e-233713027131Heat shock factor protein 1
5d5v_D1e-233713027131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241KRRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV30235.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552814.11e-127heat stress transcription factor A-2c
SwissprotQ9LUH83e-93HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2Z7B6X10.0A0A2Z7B6X1_9LAMI; Heat stress transcription factor A-6b-like
STRINGXP_009797496.11e-117(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-95heat shock transcription factor A6B