PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

KZV30078.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 226aa MW: 25381.4 Da PI: 9.4137

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV30078.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00014	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H KZV30078.1 59 FSCNYCSRKFYSSQALGGHQNAH 81 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.4E-6	56	86	No hit	No description
PROSITE profile	PS50157	11.655	59	86	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MEEQIQAQKE NRINPDLEFD LNLSTKDFSD QTSNQELTLF QISVPPHDSM LHESEPRVFS 60 CNYCSRKFYS SQALGGHQNA HKRERTIAKR GQRHCSGGAY FQHRDMAELR YPSMASLPLH 120 GSFNRSLGIQ VHSTIHKPSV LVPPFNQPGW FRKPLDQHPS IGRLAAENYH QVGQSSGGGA 180 ARFDGGRRFY PVAVDATGGF RSDASSQLKS RGNPEDMKKL DLSLKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV30078.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082208.1	2e-76	zinc finger protein 1
TrEMBL	A0A2Z7B7Z9	1e-168	A0A2Z7B7Z9_9LAMI; Zinc finger protein 1
STRING	VIT_09s0002g09080.t01	2e-66	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5827	22	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	2e-39	zinc-finger protein 1