PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV29890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 453aa    MW: 50879.5 Da    PI: 5.6343
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV29890.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS293.74.8e-90524502373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalkl..fsevsPilkfshl 96 
                 ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL ar a+  + +l  a++  ++++     +++++ +l  f++++P+++f++ 
  KZV29890.1  52 EQLLIHCANALESNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIARAAKiGTCKLLTAMANVQANDLAmNNHKFSIIELagFVDLTPWHRFGFT 150
                 79****************************************************54456666665555554443333344444466************* PP

        GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.......vakr 185
                 +aN a+leaveg + vHi+D+++++++Q p++++++++R ++pp +++T+ g +e +      ++ee+g +L +fA++ ++ ++f+v+        ++ 
  KZV29890.1 151 AANAAVLEAVEGYSVVHIVDLSLTHCMQIPTFIDSMSTRLDPPPVIKLTVAGTMEDFppmLDLSYEELGLKLINFARSRNIVMDFRVIpssskngFSSL 249
                 *****************************************************999898888999***********************98766655566 PP

        GRAS 186 ledleleeL.rvkpgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                 +edl+l+++ r ++gEal++n++++lh++                ++ s  s r+ +L+ +++l P++v++v+++ad +s+s++ r+ +a +y +  +d
  KZV29890.1 250 IEDLKLQHFvRAENGEALVINCHMMLHYISeetlsnnpnqpqvsIRTSSRLSLRTMFLESIRGLDPTIVILVDEDADFTSGSLVSRLRSAYNYLWIPYD 348
                 67777777634445****************9999999999977733344444688******************************************** PP

        GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                 ++++ lpr s++r+++E+  + ++i+nv+++eg +r+er e ++kW +r+++a F+ + +se+a  ++k++l +++  g+ v++e++ +vl+Wk++++v
  KZV29890.1 349 TMDSFLPRGSKQRQWYEAD-ICWKIENVISNEGPQRVERLEPKSKWVQRMRDASFRGIGFSEDAILEVKSMLDEHA-AGWGVKKEEEDAVLTWKGHNVV 445
                 *******************.********************************************************.999******************* PP

        GRAS 369 svSaW 373
                 +++aW
  KZV29890.1 446 FATAW 450
                 ***** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.16625432IPR005202Transcription factor GRAS
PfamPF035141.7E-8752450IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MMQFTETLPP LNQIPPFPSL PMNKNQLIRA RPWPGFPTPK SVGNFGDANC MEQLLIHCAN  60
ALESNDATLA QQILWVLNNI APPDGDSNQR LTCGFLRALI ARAAKIGTCK LLTAMANVQA  120
NDLAMNNHKF SIIELAGFVD LTPWHRFGFT AANAAVLEAV EGYSVVHIVD LSLTHCMQIP  180
TFIDSMSTRL DPPPVIKLTV AGTMEDFPPM LDLSYEELGL KLINFARSRN IVMDFRVIPS  240
SSKNGFSSLI EDLKLQHFVR AENGEALVIN CHMMLHYISE ETLSNNPNQP QVSIRTSSRL  300
SLRTMFLESI RGLDPTIVIL VDEDADFTSG SLVSRLRSAY NYLWIPYDTM DSFLPRGSKQ  360
RQWYEADICW KIENVISNEG PQRVERLEPK SKWVQRMRDA SFRGIGFSED AILEVKSMLD  420
EHAAGWGVKK EEEDAVLTWK GHNVVFATAW LPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-473845374475Protein SHORT-ROOT
5b3h_B2e-473845320421Protein SHORT-ROOT
5b3h_E2e-473845320421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV29890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099354.10.0scarecrow-like protein 32
SwissprotQ9SN221e-179SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2Z7B8430.0A0A2Z7B843_9LAMI; Scarecrow-like protein 32
STRINGVIT_07s0129g00340.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-178GRAS family protein