PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV28191.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family SBP
Protein Properties Length: 386aa    MW: 42220.7 Da    PI: 8.6277
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV28191.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.79.5e-40143220178
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +Cqve+C+ dls akeyh++h+vCe+hsk+p+v+v g+e+rfCqqCsrfh+l efDe+krsCrrrL++hn+rrrk+q+
  KZV28191.1 143 RCQVEDCNLDLSMAKEYHQKHRVCEIHSKCPKVYVGGQERRFCQQCSRFHSLYEFDEKKRSCRRRLSDHNARRRKPQQ 220
                 6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.0E-32138205IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.77141218IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-37142223IPR004333Transcription factor, SBP-box
PfamPF031106.1E-30144217IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MIVDDGEIGA GSFNLSWGGV NSGASGSEGG QGSSAKSSAS ASTDSSVKDT FRFTKFEWSN  60
GNFSQKMEMK GPEVSGISTT MGASVGSMEP LIGLKLGKRT YFENSVGGGN GKITSLSSMD  120
TRSSNTSTPK KTKASGPNAP IPRCQVEDCN LDLSMAKEYH QKHRVCEIHS KCPKVYVGGQ  180
ERRFCQQCSR FHSLYEFDEK KRSCRRRLSD HNARRRKPQQ ETVRYDSTRI TSPFYGTERR  240
QQVSFLLDNA PFIQPRIPAN SVGDSSEFTI TKGYASKSLG DGDTDEPHSN ATNGFLASKN  300
SISGYSNSGS KIASSHADAA REYHHALSLL SSSNSWGLGE PEAMPLSSPE LWMTGLHQRV  360
PTNNYFQEIP LVKPPYEADF YSNVFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-281442171184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199216KKRSCRRRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV28191.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086806.11e-146squamosa promoter-binding-like protein 12
RefseqXP_011086808.11e-146squamosa promoter-binding-like protein 12
RefseqXP_020551644.11e-146squamosa promoter-binding-like protein 12
TrEMBLA0A2Z7B2Q30.0A0A2Z7B2Q3_9LAMI; Squamosa promoter-binding-like protein 12-like
STRINGMigut.K00951.1.p1e-111(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.44e-53squamosa promoter binding protein-like 10