PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV27495.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 340aa    MW: 38235.2 Da    PI: 8.4957
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV27495.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-05115138123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 ++C++Cg+ F   ++L++H+++ H
  KZV27495.1 115 FPCTICGEIFQKLYLLEQHQSVkH 138
                 89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.328115143IPR007087Zinc finger, C2H2
PROSITE patternPS000280117138IPR007087Zinc finger, C2H2
SuperFamilySSF563991.63E-14148339No hitNo description
Gene3DG3DSA:3.90.228.106.1E-4153248IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAKFPLFVAN FFSCLVLLLH LGCFFTVPRR HHRRRSNSSS FSSFKKKLTP SSKSRLASLL  60
RRLFFLPPSS DQMHHPSSIP SPSSSTRSLR LNPPAIVFPM EENSSTPFLP SDDIFPCTIC  120
GEIFQKLYLL EQHQSVKHAV SELVDGENIV RIIFKTGWPE KGKPPTIHRI LKIHNTSKIL  180
TKFEEYREYV KSKAAAKIKP SRDERCVADG NELLRFHCTT FMCELSDSTI CNHQYCCVCG  240
IIRCGFSSKM DGISTFPTSW TAHTAVPEDI EEEFGFMNVR RALLVCRVVA GRVGCDPGIV  300
DKEDSGFDSL VGRGSGGFEE ELLVFNPRAV LPCFVIVYTA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV27495.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078217.11e-144uncharacterized protein LOC105162016
TrEMBLA0A2Z7B7040.0A0A2Z7B704_9LAMI; Uncharacterized protein
STRINGXP_009773098.11e-131(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118341821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.12e-81C2H2 family protein