PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV27452.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

Trihelix

Protein Properties

Length: 297aa MW: 35029.5 Da PI: 4.437

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV27452.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.3	4.6e-14	67	149	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e +L+++ e+ +l+r++l++ +W+ev +k+ + g+ r+ ++C++ ++ l+++ykk+++ +++ + s++++f++++ KZV27452.1 67 WSEEESFVLLDVWGERYMDLGRRSLRGEDWAEVTDKVlEMSGVDRTEVECRHQLDVLKNKYKKERAKVESG---HGSKWVFFKKMD 149 *********************************996678********************999986...6779*****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.5E-19	65	150	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MKNPNFYPYK SHATAEYEDD DVDEDEESPD QNFAQNGYYE DSKRHPKKRK LDSFVSTYEL 60 TPRKEMWSEE ESFVLLDVWG ERYMDLGRRS LRGEDWAEVT DKVLEMSGVD RTEVECRHQL 120 DVLKNKYKKE RAKVESGHGS KWVFFKKMDV LLNMRTRGHC GLGCGVDSGE YVFMNPHVYL 180 DKSNVLDEMR DSPGQSDEDN EDEEEDDEGL RGERRETESA RLLAGSIQKF GQIYEKVEES 240 KRKQMMELEK LRQDFQRELE SQRKQIVERA EAEIAKIREM EDDEHDTTDT SLENIED

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV27452.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078350.1	1e-149	trihelix transcription factor ASIL2
Refseq	XP_011078351.1	1e-149	trihelix transcription factor ASIL2
TrEMBL	A0A022Q720	1e-131	A0A022Q720_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.K00459.1.p	1e-134	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12060	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-68	Trihelix family protein