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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV27348.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 29796.9 Da PI: 8.8081 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.4 | 3e-14 | 61 | 113 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++N+ f++Lr llP+ + +s+Kls ++ ++ ++I +Lq KZV27348.1 61 KKLNHNASERDRRKKMNTMFSTLRALLPPeD---QSRKLSIPATISRVLKHIPELQ 113 6789*************************77...******************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.373 | 60 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-11 | 61 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.11E-12 | 61 | 116 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.6E-12 | 61 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.54E-15 | 61 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-11 | 66 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MVDVSAHFSG FGWPWENPIG PDIYACTEKN SNQNSDSADL QCSPAEFSKF HKVGDVNKIF 60 KKLNHNASER DRRKKMNTMF STLRALLPPE DQSRKLSIPA TISRVLKHIP ELQKEVGALI 120 QKKENLMSKK SKRVFQEEST IDFRKQLRSR KPIRNSSSAV SATRISDQEI VLQISMAKFE 180 EGSFSDVLWC LEKEGFLLQS ASCCQSPGGR VFCNAHLQGQ GSQIMDVSIL KEKVWTLYDK 240 GEEIQLNRTK FLDDYFDVFH Q |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV27348.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022842172.1 | 3e-69 | transcription factor ORG2-like isoform X1 | ||||
TrEMBL | A0A2G9HLC3 | 3e-74 | A0A2G9HLC3_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2226 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 5e-47 | bHLH family protein |