PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV26682.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 897aa    MW: 100383 Da    PI: 5.6958
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV26682.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.33.9e-11535559327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C+++ rtG C++G++C+F+H+p
  KZV26682.1 535 EPDCSYYIRTGLCRFGATCRFNHPP 559
                 799********************96 PP
2zf-CCCH38.71.7e-12580603326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 +++C+++++tGtCk+G++CkF+H+
  KZV26682.1 580 QPECQYYLKTGTCKFGSTCKFHHP 603
                 799********************8 PP
3zf-CCCH36.86.5e-12626650327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C +f+r+G+Ck+G++CkF+H++
  KZV26682.1 626 EVECAYFMRNGQCKFGSTCKFHHPQ 650
                 689********************97 PP
4zf-CCCH37.53.8e-12773798227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+f+++tG Ck+G+ CkF+H++
  KZV26682.1 773 GQPECQFYMKTGDCKFGAVCKFHHPR 798
                 5799********************96 PP
5zf-CCCH36.96.1e-12818844127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++lC f++r+G+Ck+G++CkF H++
  KZV26682.1 818 PGEPLCVFYSRYGICKFGPSCKFDHPM 844
                 589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010828.8E-8387422IPR019098Histone chaperone domain CHZ
PfamPF096499.4E-8388410IPR019098Histone chaperone domain CHZ
PROSITE profilePS5010314.267532560IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4532559IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7534559IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-5537560IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-6577604IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.385577605IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-10580603IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6581606IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-5583603IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6623650IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319623651IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6625651IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9626650IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-4629649IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5771798IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873771799IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5774801IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-9774798IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5777799IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7817844IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234817845IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8819844IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5820845IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MAETEDEPGI EVRIEHGVRS RLQHFKDQAD SLTLESVRRL LEKDLGLEKF ALDAHKRFIR  60
QYLEKQMDDA DNCDSKTASD VDKDNQLSDK EDALLPKQPE RKKESTKSTP DDKEMMEDSP  120
ILGVLSPKSE AGAQTSSLSE STIKKAIWER ADHFLANSES ITLVGVRRLL EEDLGLDKNT  180
LDPFKKYISQ QIDQVLNPPK GAKAAKDIKI SSKNSQSKKS GKTSGGEGSD SLGDESDSME  240
DKAKSRKEAA HRKNKKLEEV KKRKRSTEGD LDASSKKQNN LAKRHKEEDS EPDDAGNVSE  300
DGRSKTSIEK PRNEKPISGY GRKVEHLKSV IKACGMSVAP SIYKKAKQVS DEKREAFIVK  360
ELEGILLKEG LSKDPSEKEI KDCRKRKETA KELEGIDMSN IISSTRRRST FSFVPPPKFE  420
TRPKGDKVGA KDVKKKEKTK KDQNDDNEGE AENKKEQEEV EKKAEDEQTF EKEDDEEEDK  480
NIEDDDEEEA EDEEDEEDAE DDEESEEFIE DAFWQMNPRS REQIEPGSYP VREDEPDCSY  540
YIRTGLCRFG ATCRFNHPPN RKLAIATARM RGEYPERIGQ PECQYYLKTG TCKFGSTCKF  600
HHPIDKAGIA GRVALNVLGY PLRPNEVECA YFMRNGQCKF GSTCKFHHPQ PSNMMVPLRG  660
SSIYPPIHSP TAGQLSFPLS RASFIPSSQW QNPSSYTPMV VPQAVLSVPG WNLYTMGSVS  720
SSENRRPTAG SSLADGASPQ GEAAKIGSQF RPGTLQLGQY AFQRDNVFPE RLGQPECQFY  780
MKTGDCKFGA VCKFHHPRER LVPVPDCVLS PLGLPLRPGE PLCVFYSRYG ICKFGPSCKF  840
DHPMRAFAYN TAASSSLDPS AVRHFLASTG AVALSLTPDG LVEARQKPPG DINIDSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260265KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV26682.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7B5850.0A0A2Z7B585_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-150zinc finger protein 1