PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV25985.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NF-YB

Protein Properties

Length: 276aa MW: 31049.6 Da PI: 4.7606

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV25985.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	164.9	1e-51	7	99	2	94
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +eqd +lPianvsrimkk lPanakisk+ak+tvqecvsefi f+t+easdkcqrekrktingddllwa++tlGfe+yv +lk yl+kyre+ KZV25985.1 7 KEQDGLLPIANVSRIMKKHLPANAKISKEAKQTVQECVSEFINFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGTLKDYLNKYRECT 99 89****************************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-49	6	112	IPR009072	Histone-fold
SuperFamily	SSF47113	2.95E-37	9	116	IPR009072	Histone-fold
Pfam	PF00808	4.3E-26	13	76	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.8E-18	40	58	No hit	No description
PRINTS	PR00615	1.8E-18	59	77	No hit	No description
PRINTS	PR00615	1.8E-18	78	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MTLADTKEQD GLLPIANVSR IMKKHLPANA KISKEAKQTV QECVSEFINF ITGEASDKCQ 60 REKRKTINGD DLLWAMTTLG FENYVGTLKD YLNKYRECTE GENITVPTQE DASSTKGHGE 120 KIEDVTVCNS SNILSMGFAA GPGDHHMWEF GTFDRNYLGI SLPDDPKSSR RRFDYGEEMN 180 LALMSNADGF ENGKSYAIEE NSKSVMGEHE GPVGDPIAYP QYFDGKYAPH ENRTREAGEV 240 IPTSHQVRQL MEEHQVELES ADVWRCVYPR PTFSMS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	5e-43	7	97	2	92	Transcription factor HapC (Eurofung)
4g92_B	5e-43	7	97	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV25985.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2Z7AVW4	0.0	A0A2Z7AVW4_9LAMI; Uncharacterized protein
STRING	POPTR_0007s06480.1	9e-57	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	9e-55	nuclear factor Y, subunit B3