PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 217aa MW: 23507.7 Da PI: 8.1143

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV25774.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.3	2e-41	38	137	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da+++lvyeA++r+rdPvyG++g i++lqqq+++l+a+l+++++ KZV25774.1 38 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPESQRADAANCLVYEANVRLRDPVYGCMGAISALQQQVQNLQAQLNAVRA 136 7***********************************************************************************************998 PP DUF260 100 e 100 e KZV25774.1 137 E 137 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.614	37	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.6E-42	38	135	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MSRERVEVLD ETGKKVKTES NGSSVMGKRQ MMLNTITPCA ACKLLRRRCA EECPFSPYFS 60 PHEPQKFAAV HKVFGASNVS KMLMEVPESQ RADAANCLVY EANVRLRDPV YGCMGAISAL 120 QQQVQNLQAQ LNAVRAEILT YKYREAANNI INASNEHAAA LAVSVAELPQ APPTPTPPPP 180 PSVVVVSSSS SAASMYTSPT NTASYGSISN NHVPYFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-44	38	145	11	118	LOB family transfactor Ramosa2.1
5ly0_B	8e-44	38	145	11	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV25774.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012839914.1	1e-98	PREDICTED: LOB domain-containing protein 15
Refseq	XP_028092113.1	8e-99	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	3e-71	LBD15_ARATH; LOB domain-containing protein 15
Swissprot	Q9AT61	2e-70	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2Z7AV80	1e-158	A0A2Z7AV80_9LAMI; LOB domain-containing protein 15
STRING	Migut.N00746.1.p	5e-98	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-65	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288] Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]