PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV25770.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 714aa    MW: 78978.3 Da    PI: 8.7532
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV25770.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.4e-32385442159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kk+vers   ++++ei+Y+g+H+h 
  KZV25770.1 385 LDDGYNWRKYGQKSVKGSENPRSYYKCTHPSCPTKKQVERSL-SGQITEIVYKGSHTHA 442
                 59****************************************.9**************7 PP
2WRKY105.72.3e-33563619359
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 Dgy+WrKYGqK+vkg+++prsYY+Cts++Cpv+k+ver+++dpk v++tYeg+Hnh+
  KZV25770.1 563 DGYRWRKYGQKVVKGNPNPRSYYKCTSPQCPVRKHVERASHDPKSVITTYEGRHNHD 619
                 9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.3303.8E-23692IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549284.43E-22695IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010213.9761089IPR000504RNA recognition motif domain
SMARTSM003608.7E-131185IPR000504RNA recognition motif domain
CDDcd122466.55E-481188No hitNo description
PfamPF000762.3E-81283IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3302.2E-9147219IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549283.9E-7149219IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd122471.25E-16155192No hitNo description
SMARTSM003604.7158230IPR000504RNA recognition motif domain
Gene3DG3DSA:2.20.25.809.5E-28374444IPR003657WRKY domain
SuperFamilySSF1182907.06E-25379444IPR003657WRKY domain
PROSITE profilePS5081123.801380444IPR003657WRKY domain
SMARTSM007741.1E-35385443IPR003657WRKY domain
PfamPF031069.9E-25386441IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-36546621IPR003657WRKY domain
SuperFamilySSF1182903.27E-28553621IPR003657WRKY domain
PROSITE profilePS5081137.08556621IPR003657WRKY domain
SMARTSM007744.1E-38561620IPR003657WRKY domain
PfamPF031061.9E-25563619IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MLTSDIPPNQ TIYIRNINEK VKKEELKRSL YALFSQYGRI LDIVAMKTSK LQGQAWIVFS  60
EVAAASNALR QMHNFPFYDK PIRIQYAKTK SDCIAKAEGT YDKKKKQEER AERKRKVEEG  120
HQTANANGIR SESNGGAAAT SREGKPVTQE TATEPNHILF IQNLPYETNI MMLELLFKQY  180
PGFREVRMVE AKPGSLESTV NPGLCSVVMT SPNSFTTLLA PDHHHHPTTG TALHGEVEGR  240
KGPGVPKFKA VPPPSLPISP PSAASPFSYF GLSPAEFLDS PVLLSSSNIL PSPTTGTFPS  300
SNWKGDSNTI YQKDIKPDQK SYSDFSFQPD TVSTVFPTWE YYQEPAKQDN LPPEKNFLNS  360
EFNPNQQIDQ YNESSVCSVA ENKRLDDGYN WRKYGQKSVK GSENPRSYYK CTHPSCPTKK  420
QVERSLSGQI TEIVYKGSHT HAKPQTVRRS SATVSASSTV SASSVVIQSQ KEIREQLSDG  480
SVDIRKMDSS VATPPENSSV SVGDDEFDYR SKFGGDDFDE DGPDTKRWKC ENGSENAGGM  540
GCKTVREPRV VVQTKSDIDI LIDGYRWRKY GQKVVKGNPN PRSYYKCTSP QCPVRKHVER  600
ASHDPKSVIT TYEGRHNHDV PAPRGAGNHS LTQPVPYKPS NNAAMAGALP VRGGPVEAQA  660
FTLEMLPSPA GSFRYSGFGN TVGSGIDLSQ GNALFSRAKD EPGDYSFLDS SLYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_X5e-5551892183U2 small nuclear ribonucleoprotein B''
5o9z_15e-5551892183U2 small nuclear ribonucleoprotein B''
5xjc_p5e-5551892183U2 small nuclear ribonucleoprotein B''
5yzg_p5e-5551892183U2 small nuclear ribonucleoprotein B''
5z56_p5e-5551892183U2 small nuclear ribonucleoprotein B''
5z57_p5e-5551892183U2 small nuclear ribonucleoprotein B''
5z58_p5e-5551892183U2 small nuclear ribonucleoprotein B''
6ah0_p5e-5551892183U2 small nuclear ribonucleoprotein B''
6ahd_p5e-5551892183U2 small nuclear ribonucleoprotein B''
6ff7_X5e-5551892183U2 small nuclear ribonucleoprotein B''
6icz_p5e-5551892183U2 small nuclear ribonucleoprotein B''
6id0_p5e-5551892183U2 small nuclear ribonucleoprotein B''
6id1_p5e-5551892183U2 small nuclear ribonucleoprotein B''
6qx9_2B5e-5551892183U2 small nuclear ribonucleoprotein B''
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV25770.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080757.11e-163probable WRKY transcription factor 25
SwissprotQ6B6R41e-109WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2Z7AXU60.0A0A2Z7AXU6_9LAMI; Putative WRKY transcription factor 33
STRINGVIT_06s0004g07500.t011e-146(Vitis vinifera)
STRINGGLYMA14G38010.11e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-94WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]