PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 161aa MW: 18186.8 Da PI: 7.0586

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV25756.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.3	3.1e-44	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+C+kdCv+apyfp ++p+kfa+vhk+FGasnv+k+l+++p ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+++++l+ +la++++ KZV25756.1 5 PCASCKLLRRRCSKDCVFAPYFPPDEPHKFAMVHKVFGASNVSKMLQEVPVHQRADAVSSLVYEANARMRDPVYGCVGAISYLQNEISRLQMQLAVAEA 103 7*********************************************************************************************99887 PP DUF260 100 e 100 e KZV25756.1 104 E 104 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.332	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-44	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MGGGPCASCK LLRRRCSKDC VFAPYFPPDE PHKFAMVHKV FGASNVSKML QEVPVHQRAD 60 AVSSLVYEAN ARMRDPVYGC VGAISYLQNE ISRLQMQLAV AEAEVLVCMD QMQMPQPQSD 120 HEKCLLSASS DNVSLCDFQN YRSFNNHHTI QDPLKRESIW Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-49	3	106	9	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-49	3	106	9	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV25756.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023728886.1	2e-76	LOB domain-containing protein 12-like
Refseq	XP_024981725.1	1e-76	LOB domain-containing protein 12
Swissprot	Q8LBW3	9e-67	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2Z7AWI4	1e-118	A0A2Z7AWI4_9LAMI; LOB domain protein 12
TrEMBL	A0A2Z7BS46	1e-117	A0A2Z7BS46_9LAMI; LOB domain-containing protein 12
STRING	VIT_06s0004g07200.t01	1e-73	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	9e-68	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]