PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

MYB_related

Protein Properties

Length: 299aa MW: 33333.4 Da PI: 8.2228

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV25739.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	5e-14	138	182	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky KZV25739.1 138 PWTEDEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 182 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	7.817	24	77	IPR017884	SANT domain
SMART	SM00717	6.1E-8	25	77	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.18E-11	28	82	IPR009057	Homeodomain-like
CDD	cd00167	6.05E-7	29	74	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.9E-12	129	187	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.138	131	187	IPR017930	Myb domain
SuperFamily	SSF46689	2.01E-16	133	186	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-17	134	186	IPR006447	Myb domain, plants
SMART	SM00717	1.3E-12	135	185	IPR001005	SANT/Myb domain
CDD	cd00167	6.66E-11	138	183	No hit	No description
Pfam	PF00249	1.8E-12	138	182	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MKWGMEILSP SSCFSNSSLF LGESRATGWT QAENKAFENA LAMFDENTPD RWRRVAEMVP 60 GKTVGDVMRQ YKELEDDVSS IEAGLIPVPG YTTSLPFTLE WGGSHVYDGF NQSCHVSGGR 120 KSGSLVRSSD QERKKGVPWT EDEHKLFLMG LKKYGKGDWR NISRNFVITR TPTQVASHAQ 180 KYFIRQLSGG KDKRRASIHD ITTVTIGDNQ MLPPDDKKQP SPEFPNSASP MHELPLQWNQ 240 TNRDTIGGFN PGGILPYGAA SHGLKALGQN LSRNAAYESY LGSQNLIFQM QSELHYPNA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-15	21	94	1	76	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00568	DAP	Transfer from AT5G58900	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV25739.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080854.1	1e-147	transcription factor DIVARICATA isoform X1
Refseq	XP_020550520.1	1e-147	transcription factor DIVARICATA isoform X2
Swissprot	Q8S9H7	1e-143	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2Z7B267	0.0	A0A2Z7B267_9LAMI; Uncharacterized protein
STRING	Gorai.009G093700.1	1e-133	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA458	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	1e-96	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]