PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV25396.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 457aa    MW: 51622.5 Da    PI: 6.122
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV25396.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.6e-15280326455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  Er+RRdriN+++  L+el+P++      K +Ka++L +++eY+ksLq
  KZV25396.1 280 VHNLSERKRRDRINEKMRALQELIPHS-----HKSDKASMLDEVIEYMKSLQ 326
                 5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-19274340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.856276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-15279330No hitNo description
PfamPF000101.9E-12280326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-18280337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-16282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MERLDNELVE LLWQNGEVVL NRQTHRNSGN SSTESKQVHN HDEQKSRFAM TWTNLIQDEE  60
AISWIHCPID ESFEEELCSE FLTEIPSSNP VFEGESFLRF SGSHQHELAP ISLPPQRFET  120
LDSTRQDQIL RGDRKDGNLD LPFERREFTY MGQDDAHELS VMTIGSSHCG SNQVASSCGV  180
GSKPVSAKVD ANYVQKVSHL SDQSTETETV GQALTSSSGG SGSTFWKTAN QIDENNCHKR  240
KSRDGEQSDC LSDAIELEYG SENKSSRKSG NTRRSRVAEV HNLSERKRRD RINEKMRALQ  300
ELIPHSHKSD KASMLDEVIE YMKSLQSQIQ FMWMGSQMAQ IVVPGIPNYM SRTGMGISPI  360
AMIPQIHNLM RFSRLPQIYQ AMTVAPIPNQ TAADLRPVLK PVSYQNQMQS PSFHEQYANY  420
RNLYLMQNTS QSMNMFGLSS QSTQPNNVLA PTKYGSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284289ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV25396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100371.11e-162transcription factor PIF4
RefseqXP_011100372.11e-162transcription factor PIF4
TrEMBLA0A2Z7AVH40.0A0A2Z7AVH4_9LAMI; Uncharacterized protein
STRINGXP_009602219.11e-124(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.23e-40phytochrome interacting factor 4