PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24979.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family Dof
Protein Properties Length: 471aa    MW: 51664.4 Da    PI: 9.6357
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24979.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.1e-3958115461
      zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                 ++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++
  KZV24979.1  58 ENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKST 115
                 6789***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.1E-3259114IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-2860111IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.51660114IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106298IPR003851Zinc finger, Dof-type
PROSITE profilePS5084526.821279471IPR003388Reticulon
PfamPF024539.5E-38279434IPR003388Reticulon
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071786Biological Processendoplasmic reticulum tubular network organization
GO:0071458Cellular Componentintegral component of cytoplasmic side of endoplasmic reticulum membrane
GO:0071782Cellular Componentendoplasmic reticulum tubular network
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MIQELLGGGN VGLIGGERSK FSDPNGGFLH GSVSPSPSST PSPSSSAGAA TAPAAAMENL  60
RCPRCDSSNT KFCYYNNYNL TQPRHFCKTC RRYWTKGGAL RNVPIGGGCR KNKSTTIAAA  120
VGKASSTVGK LKTFSPEMGK STALFSGFEQ ADPFTQSPIL WATPQNSHIL SLLRANQQNP  180
SPNPLSSPGK VEGGFDPSGP IPVPPIGLSN SFHRNNQHQA QTNQAIMLGE VQNNGIQELY  240
QPEDCRKKAL HISIPIMSAA PEADPSPPKA HLQENPDWVR DIVLWRRKDA GILILLAATA  300
IWVAMEIYGF KLVTLFSWLA MAIVVCLFAW GNLNRVFNRD SPDVSRLEIS EQTAVETATL  360
FLERINEAIR MIIHLGAHSQ WLVFAGVMAS LYVLSLLGSY LDVLTIWYIG VVGGLTVPLI  420
YAKNEKKINE SAEKLRIQSE RLYFMVREKL QKLINKFTGK QKEPIKEKKA E
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24979.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554970.12e-85dof zinc finger protein DOF1.1-like
TrEMBLA0A2Z7AZX70.0A0A2Z7AZX7_9LAMI; Reticulon-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.15e-34TARGET OF MONOPTEROS 6