PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24952.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 295aa    MW: 32154.3 Da    PI: 7.2569
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24952.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.7e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     ++rWT eE+  l+ ++k++G g W+tI +          R+  ++k++w+++
       KZV24952.1  5 KQRWTSEEEAALKAGIKKYGVGKWSTILKDQDfsaalRSRSNVDLKDKWRNL 56
                     79****************************9999****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.701163IPR017930Myb domain
SuperFamilySSF466892.11E-15258IPR009057Homeodomain-like
SMARTSM007173.3E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-14556IPR009057Homeodomain-like
PfamPF002491.4E-7556IPR001005SANT/Myb domain
CDDcd116601.89E-20657No hitNo description
SMARTSM005261.2E-4117182IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150415.855119187IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.5E-10121191IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.29E-11121193IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.3E-6123180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALKAGI KKYGVGKWST ILKDQDFSAA LRSRSNVDLK DKWRNLNCMA  60
NGMGSRHRVR ISHKSSQASH KHGDAAINEM VTEKDSEEVD VTPVAESIET SYDAGSERQD  120
SRLNDLILEA VTKLKEPRGS GQHAIARYIE LHHGALFDLE RTLPANLKLL TEKGHLVKVK  180
KQYRITPKST SSELGKATPS TFANGTKNTL SQAEKNGVII LTKAQIDAEL EKMKSMSAEE  240
AAVAAARAVA EAEVAIAEAE AAAREAEEAE AEAEAARCFA DAAVKTLNCK TIQVW
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24952.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099387.11e-106telomere repeat-binding factor 1 isoform X3
TrEMBLA0A2Z7B0C20.0A0A2Z7B0C2_9LAMI; Telomere repeat-binding factor 1-like
STRINGMigut.H00343.1.p1e-100(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-55telomere repeat binding factor 1