PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV24324.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 120aa MW: 12658.9 Da PI: 8.215 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.3 | 2.5e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L YP GA++V+Ca+C+ V KZV24324.1 7 CSGCRTILLYPSGATNVCCAICNMV 31 ***********************98 PP | |||||||
2 | zf-LSD1 | 39.6 | 8.5e-13 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ rGA sVRC++C+tV KZV24324.1 46 CGGCRTLLMHSRGAASVRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 46.2 | 7.4e-15 | 84 | 107 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+C+t+L++P+GApsVRCa+C+ KZV24324.1 84 CGNCHTMLMFPAGAPSVRCAICHY 107 **********************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.1E-12 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-11 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.5E-16 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.3E-11 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.0E-12 | 81 | 109 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.5E-13 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 120 aa Download sequence Send to blast |
MQNQLVCSGC RTILLYPSGA TNVCCAICNM VTAVPPSGME MAQLVCGGCR TLLMHSRGAA 60 SVRCSCCHTV NLVPAPNHVA HVNCGNCHTM LMFPAGAPSV RCAICHYITR TNVGTSVYNL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV24324.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020551343.1 | 4e-65 | uncharacterized protein LOC105167533 | ||||
Swissprot | Q93ZB1 | 3e-50 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A2Z7AR03 | 1e-79 | A0A2Z7AR03_9LAMI; Vacuolar protein sorting-associated protein 22 | ||||
STRING | XP_009783613.1 | 2e-62 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32540.1 | 6e-53 | lsd one like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|