PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV24273.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

MYB_related

Protein Properties

Length: 1702aa MW: 188705 Da PI: 6.6839

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV24273.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.5	3.4e-09	813	854	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT eE e ++d +++G++ +++Ia+ + ++t +c+++++k KZV24273.1 813 TWTSEERETFIDKLAKFGKD-FRKIASFLD-HKTTAECVEFYYK 854 7***************99.*****.*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.57E-13	797	857	IPR009057	Homeodomain-like
PROSITE profile	PS51293	17.631	809	860	IPR017884	SANT domain
SMART	SM00717	5.0E-9	810	858	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-6	813	854	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-5	813	855	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.589	1024	1075	IPR017884	SANT domain
SMART	SM00717	4.6E-6	1025	1073	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.58E-9	1027	1075	IPR009057	Homeodomain-like
CDD	cd00167	7.72E-5	1029	1067	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1702 aa Download sequence Send to blast
MPPEPYPWDR RDFRKHERSG AEPRFGGGYG GGWPPRWRDL HHHDAQPPPY RRPYYQQQHP 60 RWYSDVRSSP LPPGHGKQAG WHMHPDEVGQ GFLPYGSRFS DRNLDEENFR TYNMGSDGVR 120 HLRNYRDNRG SFSQKYWRAT SREPVASSDG PGRNVENNEQ RPIEHAQAHN SCAANNRDEN 180 NFSHPTTDEV TSEKPDSISK EQPLKDGGNV DELGSSRKYK KETCLGSINW KPLKWSRSGS 240 LSSKGSSLSR SSSSKSLGVD SIETAAEVQQ KKLTPVQSPT ADALMTFAAT SSEEPTSRKK 300 PRLGWGEGLA KYEKKIVDDP EDDAIKSTMV VSFSNIEETE QAHTMNILEK SQRVADLEDC 360 MSPVISVACS SSPGIEEKET VNGAKVDHGT SNCSCSPSTV SQAPFDGPKF NVENLELSSL 420 SRLSSLVCEL LQSGDQSCVN TYYVGADKLF LWKSDISKAL EMTECEIDSL ETELKSFIPE 480 PKTYCPPPNL SSLQPEEIRS KRLEEQETDS NFAFRLAPLQ PVSSECMIVE NAPIGIESVE 540 HERLNVDHTD NTGCASSKCV QVSTSLEDFY PQTSRGLVNL DANISSNLVE EYPDNSLCDG 600 KNTGHADYSE LTVTKICPDL SGTCDMLDIY DSILLSNKDF ANVASEALNK LLPSGNNILN 660 FGMGSSVSCL QGDLAVIRKN FLRRKRFLSF KEKTLTLKYK LFQHFWLQGR LVSVRKLRAL 720 SHKKPDLIEH KKHRFSRTRI SAAAGNSQTV LAEVIDFVSG LLSESSFKPY RNTLKMPALI 780 LDEKEMQISR FISNNGLVED PCAVETERSM INTWTSEERE TFIDKLAKFG KDFRKIASFL 840 DHKTTAECVE FYYKNHKSDC FEKARKKPDV KRSKSHTTYM VASGKRWGRD AAAASLDILG 900 AASAMVANAS TVVEIHQKCM PGFSFGASNA HKASRSYDGP FRRLNSPDLY NNEREAVAAV 960 VLAGICDSMS PEAVSSCVKS SVDPVDRNQD LRSQRVGFYM KRPSTLDVTL TFDDECSDES 1020 CGKLDSTDWS DVEKTIFIQS LSSYGRDFEM ISQCVGTRSR DQCKVFFSKA RKCLGLDLIL 1080 PGRGNAISRD ANGGGSDVED ASAMGTGSIV CNVGSDCKME DHLLQSDIKS RHEYDRVESK 1140 RHVKLGSKKC EENNWFASRD PVDTDPLSKN SLMGNCHLDN HVMNFNVDIV RENGANGVCV 1200 SLQELGTMDV SSDEETVRMV EEAADRSLQK ESSEAENMAL VEVSGGRLGK NCQEPDLLST 1260 DKKVVDADVN STDISGINGM VNGMKSELQL SENASLPLLD VHSATQANDV SFKKKDALET 1320 YTEKSHVDPL EQNSHIASLT SSTLFSVPIR YQKLSNHHTL SAVGVDWVDD EQSRNTVGTG 1380 DCEQYLSAHT FSDPCQFLRG STVPGPILSE EKNGSVSCKN PIPLQNFSHG NLDPAHRAGF 1440 SLQKCRSLRY HSHDEASDPL RQHSGGQSGT RPSCSSNMDK PFRNGDVKLF GKILTSSEQK 1500 SHSCGQRTDD SGGQHHKSND PGSENIPVMN FGFQDRNRMQ TGLPPMANSS LLLAKYPSAF 1560 SNYAMSPAKV EQPPFQRLVK RIGRSSNCVS LFPSRDLCNR NGLTDILKSR EARPFTTDMN 1620 PKDIFITDVQ RRNRLNVVSG MQQQSRGIVG INVGRGVLVG GQCSGVSDPV AGIKMHYAKS 1680 EQFSLQSGNM MKEDRAWRRK GT

Sequence ? help Back to Top

Protein Sequence Length: 1702 aa Download sequence Send to blast

MPPEPYPWDR RDFRKHERSG AEPRFGGGYG GGWPPRWRDL HHHDAQPPPY RRPYYQQQHP  60
RWYSDVRSSP LPPGHGKQAG WHMHPDEVGQ GFLPYGSRFS DRNLDEENFR TYNMGSDGVR  120
HLRNYRDNRG SFSQKYWRAT SREPVASSDG PGRNVENNEQ RPIEHAQAHN SCAANNRDEN  180
NFSHPTTDEV TSEKPDSISK EQPLKDGGNV DELGSSRKYK KETCLGSINW KPLKWSRSGS  240
LSSKGSSLSR SSSSKSLGVD SIETAAEVQQ KKLTPVQSPT ADALMTFAAT SSEEPTSRKK  300
PRLGWGEGLA KYEKKIVDDP EDDAIKSTMV VSFSNIEETE QAHTMNILEK SQRVADLEDC  360
MSPVISVACS SSPGIEEKET VNGAKVDHGT SNCSCSPSTV SQAPFDGPKF NVENLELSSL  420
SRLSSLVCEL LQSGDQSCVN TYYVGADKLF LWKSDISKAL EMTECEIDSL ETELKSFIPE  480
PKTYCPPPNL SSLQPEEIRS KRLEEQETDS NFAFRLAPLQ PVSSECMIVE NAPIGIESVE  540
HERLNVDHTD NTGCASSKCV QVSTSLEDFY PQTSRGLVNL DANISSNLVE EYPDNSLCDG  600
KNTGHADYSE LTVTKICPDL SGTCDMLDIY DSILLSNKDF ANVASEALNK LLPSGNNILN  660
FGMGSSVSCL QGDLAVIRKN FLRRKRFLSF KEKTLTLKYK LFQHFWLQGR LVSVRKLRAL  720
SHKKPDLIEH KKHRFSRTRI SAAAGNSQTV LAEVIDFVSG LLSESSFKPY RNTLKMPALI  780
LDEKEMQISR FISNNGLVED PCAVETERSM INTWTSEERE TFIDKLAKFG KDFRKIASFL  840
DHKTTAECVE FYYKNHKSDC FEKARKKPDV KRSKSHTTYM VASGKRWGRD AAAASLDILG  900
AASAMVANAS TVVEIHQKCM PGFSFGASNA HKASRSYDGP FRRLNSPDLY NNEREAVAAV  960
VLAGICDSMS PEAVSSCVKS SVDPVDRNQD LRSQRVGFYM KRPSTLDVTL TFDDECSDES  1020
CGKLDSTDWS DVEKTIFIQS LSSYGRDFEM ISQCVGTRSR DQCKVFFSKA RKCLGLDLIL  1080
PGRGNAISRD ANGGGSDVED ASAMGTGSIV CNVGSDCKME DHLLQSDIKS RHEYDRVESK  1140
RHVKLGSKKC EENNWFASRD PVDTDPLSKN SLMGNCHLDN HVMNFNVDIV RENGANGVCV  1200
SLQELGTMDV SSDEETVRMV EEAADRSLQK ESSEAENMAL VEVSGGRLGK NCQEPDLLST  1260
DKKVVDADVN STDISGINGM VNGMKSELQL SENASLPLLD VHSATQANDV SFKKKDALET  1320
YTEKSHVDPL EQNSHIASLT SSTLFSVPIR YQKLSNHHTL SAVGVDWVDD EQSRNTVGTG  1380
DCEQYLSAHT FSDPCQFLRG STVPGPILSE EKNGSVSCKN PIPLQNFSHG NLDPAHRAGF  1440
SLQKCRSLRY HSHDEASDPL RQHSGGQSGT RPSCSSNMDK PFRNGDVKLF GKILTSSEQK  1500
SHSCGQRTDD SGGQHHKSND PGSENIPVMN FGFQDRNRMQ TGLPPMANSS LLLAKYPSAF  1560
SNYAMSPAKV EQPPFQRLVK RIGRSSNCVS LFPSRDLCNR NGLTDILKSR EARPFTTDMN  1620
PKDIFITDVQ RRNRLNVVSG MQQQSRGIVG INVGRGVLVG GQCSGVSDPV AGIKMHYAKS  1680
EQFSLQSGNM MKEDRAWRRK GT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	4e-16	771	862	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	4e-16	771	862	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV24273.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020548929.1	0.0	uncharacterized protein LOC105161106
TrEMBL	A0A2Z7AS37	0.0	A0A2Z7AS37_9LAMI; Uncharacterized protein
STRING	Migut.F01767.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5904	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-111	MYB family protein