PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24090.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 300aa    MW: 34187.3 Da    PI: 6.4013
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24090.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1016.9e-32123179258
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers +dp++ +itYeg H h
  KZV24090.1 123 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSMDDPDTHIITYEGLHLH 179
                 8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-29120179IPR003657WRKY domain
SuperFamilySSF1182901.14E-26120179IPR003657WRKY domain
PROSITE profilePS5081126.429121179IPR003657WRKY domain
SMARTSM007749.7E-35122181IPR003657WRKY domain
PfamPF031063.8E-25123179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDELIKVTQG PANELVEELL DNESPFFLPQ HHHDHGVMGS NQSPSMLESY LLGSMGYSGP  60
TIEDVETSLS YTNHGVHSFQ HEEYKWSEEC RTSMLERDYM NKANHDNHKY SLRIKNCGNI  120
MADDGYKWRK YGQKSIKNSP NPRSYYRCTN PRCSAKKQVE RSMDDPDTHI ITYEGLHLHF  180
PYPFSLINSN HMDWSVPPTK KHKGPQPEIQ YISHHGDRIA QETGIKDCLK SIYPGPMDQG  240
IESQLMSPQG LLEDMVPLMI RKPFISKLNN TTASSSSCAS SPDSSNPFPW SPDYSFLGLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-191211791674Probable WRKY transcription factor 4
2lex_A7e-191211791674Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094877.11e-85probable WRKY transcription factor 49
TrEMBLA0A2Z7AT790.0A0A2Z7AT79_9LAMI; Putative WRKY transcription factor 49
STRINGMigut.J00318.1.p6e-80(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120752124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.15e-50WRKY DNA-binding protein 49