PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24021.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 492aa    MW: 52305.5 Da    PI: 7.7759
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24021.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.48.9e-125175226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                +++ C +++rtG+C yG+rC+F+H+
  KZV24021.1 51 DEADCIYYLRTGFCGYGSRCRFNHP 75
                6799********************8 PP
2zf-CCCH37.15.3e-1297122227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +++ C+++++tG Ck+G +Ck+ H++
  KZV24021.1  97 GQPVCQYYMQTGVCKFGVSCKYDHPK 122
                 7899********************96 PP
3zf-CCCH31.72.5e-10143168227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C ++ +tG+Ck+G +CkF+H++
  KZV24021.1 143 GEKECAYYIKTGQCKFGITCKFHHPQ 168
                 5789********************97 PP
4zf-CCCH38.42e-12313339127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+++++tG CkyG++Ck++H+p
  KZV24021.1 313 PGQPECQYYLKTGDCKYGSTCKYHHPP 339
                 5789*********************97 PP
5zf-CCCH35.51.7e-11368390426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C+++a++G CkyG++CkF H+
  KZV24021.1 368 PVCSHYAQNGVCKYGPSCKFDHP 390
                 78********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0514977IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-54976IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-95175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-65277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-55575IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.92595123IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-795122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-696124IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-996122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-5100122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77141169IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-4141168IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-7143168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5144169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986312340IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6312339IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-10314339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-5317340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4318338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6361390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671364392IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5364391IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-9368390IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-6369390IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MERYGGALFA EAGQVDPVAE WAAFGGETGL EEPMWQLGLG GGSESYPERP DEADCIYYLR  60
TGFCGYGSRC RFNHPHDRGA ATGSLRSSGG EYPERFGQPV CQYYMQTGVC KFGVSCKYDH  120
PKHRIEFSTA VTLNFYGYPL REGEKECAYY IKTGQCKFGI TCKFHHPQPA GLHVPAQLPG  180
PGPLAAPTGL PGTTVFPTAR SPIQSSQQYG IVPGNWPAVR PAILPGSYPP GNYGPLIFPP  240
GVVPVPGWTP YPTAASPVPP SSTQPTIGGS PMIGIVPIST STSAFSVSSY VPVSSSTGYS  300
SSSQKENTFP DRPGQPECQY YLKTGDCKYG STCKYHHPPD WSAPRSGFLL SPMGLPLRPS  360
DHAFQGAPVC SHYAQNGVCK YGPSCKFDHP IRSLSYSTSA SSLTDMPVAP YPVAYKNASV  420
APSSSSSELR PDLISGIAKD AFLMPMSSLN STSSSSGSAF SKSGPFSELN VHQSGQGSTI  480
SSGRSSPGQE GR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858954.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ84W911e-142C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2Z7AQ290.0A0A2Z7AQ29_9LAMI; Zinc finger CCCH domain-containing protein 58-like
STRINGMigut.G00186.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-108C3H family protein