PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23973.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 75aa    MW: 8738.89 Da    PI: 9.9591
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23973.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10852344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT++E +l+ +a +++ ++   +W  +ar +g g++++++k ++
       KZV23973.1  8 SWTPQENKLFEKALARFDKDtpdRWQNVARAVGGGKSAEEVKRHF 52
                     7*******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.79460IPR017884SANT domain
SMARTSM007172.3E-8558IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-4854IPR009057Homeodomain-like
CDDcd001675.59E-6852No hitNo description
PfamPF002498.5E-9852IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-12864IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MASRSLSSWT PQENKLFEKA LARFDKDTPD RWQNVARAVG GGKSAEEVKR HFEILMEDLR  60
RIESGRIPFP NYRNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-289751176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23973.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582408.16e-41PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1733e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2Z7AR884e-49A0A2Z7AR88_9LAMI; Protein RADIALIS-like 3
STRINGMigut.B00229.1.p3e-39(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-33RAD-like 6