PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23926.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 687aa    MW: 76457.3 Da    PI: 4.4911
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23926.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13.1e-11534575346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rW++++ el++++v+q+G++  ++I + ++ gRt+ q+k+++ k
       KZV23926.1 534 RWSKQDTELFYEGVRQFGTD-LSLIQQLFP-GRTRRQVKLKYKK 575
                      8*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.7E-26525607No hitNo description
PROSITE profilePS5129310.447530581IPR017884SANT domain
SMARTSM007171.6E-8531579IPR001005SANT/Myb domain
CDDcd001671.17E-7534575No hitNo description
Gene3DG3DSA:1.10.10.604.0E-6534575IPR009057Homeodomain-like
SuperFamilySSF466892.99E-10534580IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MGIDLDPLDD ILAVGATKNA RPTGKFQPKA KLRPPRNDST PTLSSSSGAA LINEAVESEL  60
SEPATFTKPS AHDDKWNCGS ECFLDEKVAN SSVNLQSSLD VEPNDSGGWH SCMEKSLGEN  120
TDIFIGLDSL DDFIPHTASD IEGTIPPQET RTVIIPNSHN GEGGLDIPVV SSVDNKNQTS  180
KATDAPSFPL SDGEPTVPTS DGVGNMVNGV METRERDLMD LENISELITR SDKRTGKFHP  240
KPKMKMQEIS KGGIKSVSSP FCPQQISPEI NIANEESLTA FEPEDVLDLS SIGFSPAIPA  300
GFGCIIYQAS RRAKSRKNDV PTGSDSSQPQ EDPFTSTREN EPGRFLRPRK PKKIICELVD  360
EAEDEILVGR VSTDECPGGS ALEEDSNNSE EYQVDNEIPK EKVKRKSKKE EGDKEKTTRK  420
RKATKGVSEQ DVDAKPKKFS HSTRRRKLDR VLLETPEDDI DYQKVPLRDL ILLAEHKERQ  480
MKKEEAGEPS TKPSHDNSSE FLNDDNDGNF SPMVEESSLY FNYQTYMDKT PIARWSKQDT  540
ELFYEGVRQF GTDLSLIQQL FPGRTRRQVK LKYKKEEREQ PLRLSDALTN RAKDHSHFEA  600
VIVRLQQIAA EENENADKDG SIELGDNDVT DVGIPNVSDD EEAKNEQVEG HEKEEDVGQV  660
LAEDGSPLKS YDSDDDLFRW SQYKSDT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403421KRKSKKEEGDKEKTTRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23926.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076930.10.0transcription factor TFIIIB component B''-like
TrEMBLA0A2Z7AR760.0A0A2Z7AR76_9LAMI; Transcription factor TFIIIB component B
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59022326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.16e-45MYB_related family protein