PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23670.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 216aa    MW: 23683.7 Da    PI: 8.0893
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23670.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043126148123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F +   L  H+r+H
  KZV23670.1 126 HECSICGSEFASGQALGGHMRRH 148
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.8E-134570IPR007087Zinc finger, C2H2
SuperFamilySSF576673.87E-84568No hitNo description
SMARTSM003550.84668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0974673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SuperFamilySSF576673.87E-8121148No hitNo description
PfamPF139121.4E-11126150IPR007087Zinc finger, C2H2
SMARTSM003550.031126148IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785126153IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MANCLILLAR SGFPPGEMVA PEKLCSRKFT QLAATTNGSK VGIFVYECKT CYRTFPSFQA  60
LGGHRASHKK PKTAAENDRK KSPPADDDQE EEEDRKFSGL NHIIAQPTSS ELTHKTLQIA  120
NKPKIHECSI CGSEFASGQA LGGHMRRHRS AANTPPRSTA PPHDVSEKPS KILLSLDLNL  180
PAPPEDDHRE TNFNQFPANP QQSLVLSAAT LVDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347206.13e-69PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2Z7AS161e-159A0A2Z7AS16_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000184571e-68(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-48C2H2 family protein