PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23346.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 285aa    MW: 32667.2 Da    PI: 5.047
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23346.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.7e-1880133356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+ +++ +q++ Le+ Fe ++++  e++ +LAk+lg++ rq+ vWFqNrRa+ k
  KZV23346.1  80 KKSRLSIDQVQFLERSFEADNKLEPERKIQLAKELGVQPRQIAVWFQNRRARCK 133
                 56678899********************************************99 PP
2HD-ZIP_I/II121.83.4e-3979169191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekk rls +qv++LE+sFe+++kLeperK +la+eLg+qprq+avWFqnrRAR ktkqlE+dye+L ++yd+lk++ ++L +e+e+L+ e+
   KZV23346.1  79 EKKSRLSIDQVQFLERSFEADNKLEPERKIQLAKELGVQPRQIAVWFQNRRARCKTKQLETDYETLLASYDSLKTDYDNLLNEKEKLKMEV 169
                  69*************************************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1868137IPR009057Homeodomain-like
PROSITE profilePS5007116.87675135IPR001356Homeobox domain
SMARTSM003892.6E-1777139IPR001356Homeobox domain
PfamPF000464.3E-1580133IPR001356Homeobox domain
CDDcd000861.07E-1680136No hitNo description
Gene3DG3DSA:1.10.10.601.3E-1883142IPR009057Homeodomain-like
PRINTSPR000312.2E-5106115IPR000047Helix-turn-helix motif
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PRINTSPR000312.2E-5115131IPR000047Helix-turn-helix motif
PfamPF021832.5E-14135175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MADWVGGDAK KLMQRRKRSC TDRPLEPIVA KSRANSSFGS STMVSFGAFG AKSRNSYLYS  60
CDQEEIADED FDEYLNQTEK KSRLSIDQVQ FLERSFEADN KLEPERKIQL AKELGVQPRQ  120
IAVWFQNRRA RCKTKQLETD YETLLASYDS LKTDYDNLLN EKEKLKMEVL HLKENVIVGC  180
NGKRDSRICD AEESSEILLE RHQESKDSAV GDENMNHSSV RSNATDTISP CFSNMINSPR  240
TESGDSSHVF EPDWSEFSPS KYPHSPANSS YFVFPAEEHG FSFWY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135RRARCKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23346.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037212.18e-74PREDICTED: homeobox-leucine zipper protein HAT5
TrEMBLA0A2Z7API70.0A0A2Z7API7_9LAMI; Homeobox protein isoform 1
STRINGEOY217133e-73(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.13e-37homeobox 3