PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23306.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 416aa    MW: 47608 Da    PI: 6.2493
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23306.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.52.6e-211053245
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                r en s rqvt+ kRr+gilKKA+E+SvLCd+++ +++fs+tgk
  KZV23306.1 10 RLENLSSRQVTYGKRRAGILKKAQEISVLCDIDIILLMFSPTGK 53
                789***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.74161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-18323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-181155IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGRVKLKIQR LENLSSRQVT YGKRRAGILK KAQEISVLCD IDIILLMFSP TGKPSIFRGP  60
RSNIDEMIAK YAQLTPKERA KRRLESLETL KRNFKKLDQD VDIEEFLDAS TPSVEEMQNR  120
VRMLRDQLTQ VHNRLSWWTN PDKIEDVEHL NQMENSLMES LNRIRMQKEI FAKYPLTPFD  180
CTSQFVNGLH FPTTTTSDQH CQAQSWFPEG ESQHMMLPNE THFLSSRDLE CTQDASFPSC  240
SSFFGDVKDD NLDNSRQQKN EAQNNITIDD YTSSAQLRLP LSEQFAYHPF GNLSYPDVLE  300
TGREANFLPS AMDYQINGNF ELPRSVYNSL QHSLVPAAGP CTISMLTENS YLQVSPRQLV  360
TRFVVQKTSL KGGLDAFTTT ALSYITCEFL QVLSSCFLAY IHMLLMQITG ISQPPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-15192190MEF2 CHIMERA
6byy_B7e-15192190MEF2 CHIMERA
6byy_C7e-15192190MEF2 CHIMERA
6byy_D7e-15192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23306.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071696.10.0agamous-like MADS-box protein AGL65 isoform X2
SwissprotQ7X9I02e-79AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A2Z7APF10.0A0A2Z7APF1_9LAMI; Uncharacterized protein
STRINGMigut.I00190.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76402124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.19e-82AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]