PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23061.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 347aa    MW: 39454.2 Da    PI: 6.9441
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23061.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.47.5e-131052244
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                +i+ +  r  tf kR++g+ KK + L +LC++++++ii++++ 
  KZV23061.1 10 FISKEKSRIMTFKKRKEGLKKKLHQLTTLCGVDACMIIYGPRE 52
                7999999*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.24E-16179IPR002100Transcription factor, MADS-box
SMARTSM004326.2E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.951151IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-6323IPR002100Transcription factor, MADS-box
PfamPF003198.4E-151051IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRAKLHMDF ISKEKSRIMT FKKRKEGLKK KLHQLTTLCG VDACMIIYGP REEKGAIEPD  60
IWPQNSDETR RMIDSYKGMN KDSIKSYGLS DFFQDRAKRV EDELSKLRKK NIETRYPTWL  120
DCLDGLAAVR LREFAAKLTV KIEDLRSRVE NLKKSREVLD LNLIDFGRID PTFQNQSFFN  180
AGMIQRRNIG FEVINQQAIS SIIHFPNLDH NQELHFVNQN SMMMPTLNED DHCVNSVGSY  240
DMFGGASTSG NISFNQEGFY ELTAMDPLTL FGGASTSGNI SFNQEGFYEL PAMDPMTCYN  300
PMSLARFYAP PPLAPTHYTM PWVLPSERIP VAMPPLPGFP HEIGGGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23061.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552001.12e-92agamous-like MADS-box protein AGL14
TrEMBLA0A2Z7AMN50.0A0A2Z7AMN5_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-19M-type_MADS family protein