PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21747.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family Trihelix
Protein Properties Length: 837aa    MW: 92929.7 Da    PI: 7.7504
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21747.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.52e-19746826186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+ +ev++Li++r e+++r++  + +++lWee+s+++ + g++rsp qCk+ w +l ++y++ k   k      ++++pyf++++
  KZV21747.1 746 KWKPEEVKKLIKLRGELHSRFQVLRGRMALWEEISSNLLSDGVTRSPGQCKSLWTSLVQKYEESKSEIKM-----QKSWPYFEDMN 826
                 7*************************************************************99988886.....456*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.101.3E-6438288IPR001279Metallo-beta-lactamase
SuperFamilySSF562811.72E-7139453IPR001279Metallo-beta-lactamase
SMARTSM008494.2E-2451248IPR001279Metallo-beta-lactamase
PfamPF007532.5E-1152197IPR001279Metallo-beta-lactamase
Gene3DG3DSA:3.60.15.109.3E-4352425IPR001279Metallo-beta-lactamase
PfamPF075211.2E-7393425IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.223739803IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.5E-6742805IPR009057Homeodomain-like
SMARTSM007170.0032743805IPR001005SANT/Myb domain
PfamPF138372.5E-17744828No hitNo description
CDDcd122031.13E-20745810No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
SSKAPRGRSG RTEGPGKSME DSVQRKMEQF YEGSDGPPLR ILPIGGLGEI GMNCMLLGNY  60
DRYILIDAGV MFPDYDELGV QKIIPDTAFI KKWSHKIEAV VITHGHEDHI GALPWVIPAL  120
DAHTPIFASS FTMELIKKRL KEFGILVPSR LKVFKTRRRF VAGPFEVEPI TVTHSIPDCS  180
GLVFRCADGT ILHTGDWKID ESPLDGKVFD RVALEELSKE GVTLMMSDST NVLSPGRTIS  240
ETVVANSLLR HISSATGRVI TTQFASNIHR LGSVKVAADL TGRKLVFVGM SLRTYLDAAW  300
RDGKAPIDPS TLVKVEDIDA YAPKDLLIVT TGSQAEPRAA LNLASYGSSH SLKLNKDDLI  360
LYSAKVIPGN ETRVMKMLNR VSEIGSTIVM GKNEMLHTSG HAYREELEEV LKIVKPQHFL  420
PIHGELLFLK EHELLGKSTG IRHTTVIKNG EMLGVSHLRN RRVLSNGFAS LGKQNLQLMY  480
NDGDKAFGTA AELCIDERTR IAFDGIIVIS MEILRPQASD DLVEKALKGK IRITTRCLWL  540
DKGKLLDVLH KAAHTALSSC PVNSPLPHME RTVSEVLRKI VRKYSSKRPE VIAIAFENPG  600
AVLTDEISAK LSGKWHINSE VSTLRKSVDG QKHKRQPIDL LGEDGNGLAS VRNTTKLELE  660
VNNEIVPLED EMMSDSDLPE SAPSADESED FWKSFLTSSV LNQSKGNVDL LPEEEHKEQA  720
EQKSSKVDSG LPNSGLGTST PAKRNKWKPE EVKKLIKLRG ELHSRFQVLR GRMALWEEIS  780
SNLLSDGVTR SPGQCKSLWT SLVQKYEESK SEIKMQKSWP YFEDMNRILS DLEMKAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A8e-863959719560RIBONUCLEASE J
5a0t_B8e-863959719560RIBONUCLEASE J
5a0v_A8e-863959719560RIBONUCLEASE J
5a0v_B8e-863959719560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21747.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073024.10.0uncharacterized protein LOC105158090 isoform X1
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A2Z7AQW80.0A0A2Z7AQW8_9LAMI; RNA-metabolising metallo-beta-lactamase family protein (Fragment)
STRINGMigut.I00512.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58742331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]