PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21183.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 320aa    MW: 33553 Da    PI: 7.1656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21183.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-07160213554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C......TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.as...kapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P+ +      +    + a++L + v+Y+k L
  KZV21183.1 160 HSIAERLRRERIAEKIRALQELVPSvNKvgsLLQMMLTDRAAMLDEIVDYVKFL 213
                 99***********************66577544444478899999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-12153223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684155213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12157223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-9159218No hitNo description
PfamPF000104.9E-5160213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-8161219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MANHSGETPS DDFLEQILGF QGYAAGTESN LAGNVAGNMG AASSATMMLQ LGSGDVSAHL  60
GGVGMAVGIG GPYGGLGQAG GGRFPLGLSL EHGKGGFMKM DDASGSGKRF RDDGLSSGTS  120
SSVKSGFHGQ QMLNTGPPGP QQPAVRPRVR ARRGQATDPH SIAERLRRER IAEKIRALQE  180
LVPSVNKVGS LLQMMLTDRA AMLDEIVDYV KFLRLQVKVL SMSRLGGAGA VAPLVTDIPI  240
ASVEEEGVNG GRAQPAWEKW SNDGTERQVA RLMEENVGAA VQFLQSKALC IMPISLASAI  300
YHTQPPDTAT YIKPESNPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21183.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831677.11e-153PREDICTED: transcription factor UNE12
SwissprotO227681e-116UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2Z7AHA60.0A0A2Z7AHA6_9LAMI; Uncharacterized protein
STRINGMigut.D00370.1.p1e-153(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.23e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]