PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20826.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 496aa    MW: 54141.5 Da    PI: 6.8868
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20826.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.51.4e-33228284259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++++ei+Y+g+Hnh+
  KZV20826.1 228 DDGYNWRKYGQKQVKGSEYPRSYYKCTHTSCPVKKKVERSF-DGQITEIIYKGQHNHS 284
                 8****************************************.***************7 PP
2WRKY105.82.2e-33382440159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+a+dpk+v++tYeg+H+h+
  KZV20826.1 382 LDDGYRWRKYGQKVVKGNPYPRSYYKCTNPGCNVRKHVERAASDPKAVITTYEGKHTHD 440
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-30223286IPR003657WRKY domain
SuperFamilySSF1182903.27E-26225286IPR003657WRKY domain
SMARTSM007747.4E-37227285IPR003657WRKY domain
PfamPF031061.4E-25228283IPR003657WRKY domain
PROSITE profilePS5081123.927228286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-37367442IPR003657WRKY domain
SuperFamilySSF1182909.02E-30374442IPR003657WRKY domain
PROSITE profilePS5081137.815377442IPR003657WRKY domain
SMARTSM007745.0E-40382441IPR003657WRKY domain
PfamPF031063.1E-26383440IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MAERNPAPPS SSNPRRPMIT LPPTSSIENL FTGGPGVSPG PMSLVSSFFA ENDPDTDCRS  60
FSQLLSGAVS SPAAVPDVRQ AFAAHQQQAA EEASRESGGG SGDFRFQQSR PAGLAVSPMS  120
GIFTIPPGLS PASLLDSPGF SSYAQGLFGS SHQQILAQIP IQSQMHIQPS YPSLSSAPAS  180
SLLHLQPSLL QQHIPPISDP NNTKESSDVS QSDQKPPPSN ITVDKPSDDG YNWRKYGQKQ  240
VKGSEYPRSY YKCTHTSCPV KKKVERSFDG QITEIIYKGQ HNHSPPSKRA RDTGNASSET  300
GFEVQTGNNR PRNEDEVPEH TSVSSDSDEV GDAENRLDGR DVDEPESKRR NTEVLTSEQA  360
SNHRTVTEPR IVVQTTSEID LLDDGYRWRK YGQKVVKGNP YPRSYYKCTN PGCNVRKHVE  420
RAASDPKAVI TTYEGKHTHD VPAAKTSSHS AAAAASQLRS QNAFIDGATV NNRNIEFRNN  480
EQQPVARLQF KEEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-42228443878Probable WRKY transcription factor 4
2lex_A2e-42228443878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20826.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070970.10.0probable WRKY transcription factor 3 isoform X2
SwissprotQ9ZQ701e-160WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2Z7AGX60.0A0A2Z7AGX6_9LAMI; Uncharacterized protein
STRINGXP_009794188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-148WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]