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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV20751.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | NF-YA | ||||||||
Protein Properties | Length: 246aa MW: 27273.3 Da PI: 9.4651 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103 | 2.8e-32 | 95 | 151 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh hAl+R RgsgGrF KZV20751.1 95 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKTRKPYLHESRHVHALNRVRGSGGRF 151 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.0E-36 | 93 | 154 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.576 | 94 | 154 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.3E-24 | 97 | 119 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.5E-27 | 97 | 151 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 99 | 119 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.3E-24 | 128 | 151 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEKTSSQDHS ASSDSAHDEN YEKQGNYMKP ALFHCDPNFS TNASQVDINQ PMVPYCYSDP 60 CLGGFFTAYS PHTMIQPHGG AASGRVPLPV NLPEDGPIYV NAKQYHGILR RRQIRAKLEA 120 QNKLVKTRKP YLHESRHVHA LNRVRGSGGR FLSTKKPQQS GTNSTPSSRN TQDSLHFNQN 180 GEFLEGDSRL FDDNKRKLPP VADRMSISQA ESPFSSIPSH VQVSMQGGGG SGLVYNGNWH 240 YASTVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-21 | 95 | 155 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV20751.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553567.1 | 2e-98 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
Refseq | XP_020553568.1 | 2e-98 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
Refseq | XP_020553569.1 | 2e-98 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
Refseq | XP_020553572.1 | 1e-98 | nuclear transcription factor Y subunit A-3 isoform X5 | ||||
Refseq | XP_020553573.1 | 1e-98 | nuclear transcription factor Y subunit A-3 isoform X5 | ||||
TrEMBL | A0A2G9HRD3 | 6e-85 | A0A2G9HRD3_9LAMI; CCAAT-binding factor, subunit B (HAP2) | ||||
STRING | Migut.J00955.1.p | 3e-79 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5009 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 7e-39 | nuclear factor Y, subunit A6 |