PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV20194.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 527aa MW: 55934.2 Da PI: 8.4293

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV20194.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H KZV20194.1 63 FVCEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	16.4	2.6e-05	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ KZV20194.1 139 FKCERCSKKYAVQSDWKAHMKTC 161 89*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	62	85	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.66E-8	62	85	No hit	No description
PROSITE profile	PS50157	10.949	63	85	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.5E-5	63	85	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	63	85	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.2E-5	127	160	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.66E-8	134	160	No hit	No description
SMART	SM00355	53	139	159	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
MAEIENSASQ ASGESSFLLP DNHGKSVEPT LPLKKKRNLP GMPDPDAEVI ALSPKTLLAT 60 NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTNKEVR KRVYLCPEPT CIHHDPSRAL 120 GDLTGIKKHF CRKHGEKKFK CERCSKKYAV QSDWKAHMKT CGTREYRCDC GTLFSRRDSF 180 ITHRAFCDAL AQESALTQPL AITNSGGDMK LQVVAPPVTT VVSSPPPPPL TPSTGVLSPV 240 LSIQSSELPE NQTAQLQPPP GAAAPFPGAP AAVVTVTASN SSTSSGNVPG NGGVFASIFN 300 VPTSAELSHS AQPPVASYST MLCTMAGRDQ PVIDPMSLSL SSTLYMSSGS SSLYPAALEH 360 PHRHYTSAPQ PALSATALLQ KAAQMGASSS NSSFLRGLGL AMTPPPDPQD SRHSIIAPSH 420 WNNNTPHVKL ETNSVASGLG LGLPSSGSSA SFNELMINSS SLFGNKPATL DFLGLGMGAG 480 ETSTGGFSAF LSSITDGLDI ATSNSFAGVG STVDAWDYPS DRKPSML

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

MAEIENSASQ ASGESSFLLP DNHGKSVEPT LPLKKKRNLP GMPDPDAEVI ALSPKTLLAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTNKEVR KRVYLCPEPT CIHHDPSRAL  120
GDLTGIKKHF CRKHGEKKFK CERCSKKYAV QSDWKAHMKT CGTREYRCDC GTLFSRRDSF  180
ITHRAFCDAL AQESALTQPL AITNSGGDMK LQVVAPPVTT VVSSPPPPPL TPSTGVLSPV  240
LSIQSSELPE NQTAQLQPPP GAAAPFPGAP AAVVTVTASN SSTSSGNVPG NGGVFASIFN  300
VPTSAELSHS AQPPVASYST MLCTMAGRDQ PVIDPMSLSL SSTLYMSSGS SSLYPAALEH  360
PHRHYTSAPQ PALSATALLQ KAAQMGASSS NSSFLRGLGL AMTPPPDPQD SRHSIIAPSH  420
WNNNTPHVKL ETNSVASGLG LGLPSSGSSA SFNELMINSS SLFGNKPATL DFLGLGMGAG  480
ETSTGGFSAF LSSITDGLDI ATSNSFAGVG STVDAWDYPS DRKPSML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	135	204	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-34	135	204	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV20194.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074522.1	0.0	protein indeterminate-domain 2
Refseq	XP_011083713.1	0.0	protein indeterminate-domain 2-like isoform X1
Refseq	XP_020551047.1	0.0	protein indeterminate-domain 1-like isoform X2
Swissprot	Q9LVQ7	1e-138	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2Z7AM57	0.0	A0A2Z7AM57_9LAMI; Zinc finger protein JACKDAW-like
STRING	XP_009805007.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-114	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]