PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20184.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 89aa    MW: 10169.2 Da    PI: 6.2441
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20184.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.3e-11652347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT    +l+ da + + ++   +W   ar +g g+t +++ks++qk+
       KZV20184.1  6 KWTSKQNKLFEDALASFDKDsadRWQHLARAVG-GKTVEDVKSHYQKL 52
                     8********************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.6E-6355IPR001005SANT/Myb domain
PROSITE profilePS500906.168553IPR017877Myb-like domain
CDDcd001673.85E-6653No hitNo description
SuperFamilySSF466894.68E-11660IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-4652IPR009057Homeodomain-like
PfamPF002491.3E-7652IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGSDSKWTSK QNKLFEDALA SFDKDSADRW QHLARAVGGK TVEDVKSHYQ KLVTDIDHIE  60
TGKVPVPNYK SYAENGNCSY NMMNEQEQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-26275679RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20184.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083676.14e-40protein RADIALIS-like 4
SwissprotQ1A1731e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2Z7AM483e-61A0A2Z7AM48_9LAMI; Protein RADIALIS-like 3
STRINGMigut.C00740.1.p8e-33(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-31RAD-like 6