PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20179.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 99aa    MW: 11401.7 Da    PI: 9.0833
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20179.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.9e-091356344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +++ +a +++  +   +W+ Iar +g g+++ ++k ++
       KZV20179.1 13 TWTPRQNKQFEEALAKYDRDtpdRWHNIARAVG-GKSADEVKGHY 56
                     7*****************99*************.********999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.914964IPR017884SANT domain
SMARTSM007172.6E-81062IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-71164IPR009057Homeodomain-like
PfamPF002491.1E-61256IPR001005SANT/Myb domain
CDDcd001675.05E-71360No hitNo description
SuperFamilySSF466892.18E-121466IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MSSSSSQSSR FMTWTPRQNK QFEEALAKYD RDTPDRWHNI ARAVGGKSAD EVKGHYEALV  60
KDIMHIENDQ VPIPNYGPIS SHPRGYGNEC RLFKNLRLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-2514991193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20179.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.16e-47protein RADIALIS-like 3
SwissprotQ1A1731e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2Z7ALV28e-70A0A2Z7ALV2_9LAMI; Protein RADIALIS-like 3
STRINGXP_009771192.16e-41(Nicotiana sylvestris)
STRINGXP_009774057.15e-41(Nicotiana sylvestris)
STRINGXP_009607881.15e-41(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-32RAD-like 6