PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20157.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 312aa    MW: 35812.2 Da    PI: 7.9668
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20157.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.39.8e-14953145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                ++i+ +  r +tf kR++g+ KK + L +LC++++++ii++++++
  KZV20157.1  9 EFISKEKSRITTFKKRKEGLKKKLYQLTTLCGVDACMIIYGPSQE 53
                589999***********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.44E-16177IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-11164IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.231151IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-7323IPR002100Transcription factor, MADS-box
PfamPF003196.9E-161052IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGRAKLHMEF ISKEKSRITT FKKRKEGLKK KLYQLTTLCG VDACMIIYGP SQEKGAIEAD  60
IWPKNSDETR RMIDIYKGMN KDSIKSYGLS DFFQDRAKRI DDELSKLRKK NIETRYPTWP  120
DSLNRLTAVE LREFAANLTA KIEDIRARVK YLKKSKEVLD MNLIDFGRID PMFQNQSFFN  180
AGMIQPRNMG FEVINQQAIS SIVHFPNLDH NQEMHFVNQN SMMMPTLNED HHCVQFGGAS  240
TSGNISFTQE DFYESTAMDP MTCYDPMSFA RFYAPPPMAP TQYMMPWVLP AEQIPVAMPP  300
LPGFPNEIGG GL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20157.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552001.16e-98agamous-like MADS-box protein AGL14
TrEMBLA0A2Z7AEG40.0A0A2Z7AEG4_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-19M-type_MADS family protein