PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20154.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family DBB
Protein Properties Length: 324aa    MW: 35636.1 Da    PI: 7.2822
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20154.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.3e-07443538
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                 C+ +++ e++ fC  ++  lC+ C    H+       H+
  KZV20154.1  4 QCDVCDNDEASVFCVADEAALCAACDHRVHHAnklagkHN 43
                7******99******************9964446666665 PP
2zf-B_box30.66.9e-105290238
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                + ++C+ ++e ++ lfC++++  lC++C  ++Hk   Ht
  KZV20154.1 52 QVPICDICQERRAFLFCQQDRAILCKECDISIHKAnaHT 90
                789******************************888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.722147IPR000315B-box-type zinc finger
CDDcd000213.14E-6347No hitNo description
PfamPF006431.4E-5443IPR000315B-box-type zinc finger
SMARTSM003361.2E-7447IPR000315B-box-type zinc finger
Gene3DG3DSA:3.30.60.209.4E-44485No hitNo description
PROSITE profilePS5011910.1685198IPR000315B-box-type zinc finger
SMARTSM003366.6E-155198IPR000315B-box-type zinc finger
PfamPF006436.0E-85293IPR000315B-box-type zinc finger
CDDcd000211.01E-105498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MKIQCDVCDN DEASVFCVAD EAALCAACDH RVHHANKLAG KHNRFSLHHP KQVPICDICQ  60
ERRAFLFCQQ DRAILCKECD ISIHKANAHT QKHTRFLLTG VKVSATSTLY SDAPSSSESP  120
AIAQKVSDSD PKAKSKESRN KPAFAGPNPG KPFTAKRTTV QTTPVVAPEF CDKSHGNLMS  180
GGNLNGSIST SSISEYLVET LPGWHVEDFL DPSPLPYGLC KTGENDVLPF LDTDFEGSMC  240
SFPVQKMGFW VPQVPQSLLQ TQPQSYQSID ISFGVANGNG LKEQTMEFTK HNIKSSTRWS  300
DDNSFAVPQI SPPSNTSKRH RTYC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20154.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083607.11e-126B-box zinc finger protein 21
TrEMBLA0A2Z7AM180.0A0A2Z7AM18_9LAMI; B-box zinc finger protein 21
STRINGMigut.N03131.1.p1e-105(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.17e-88salt tolerance homolog2