PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

KZV20139.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 401aa MW: 43306.9 Da PI: 9.6928

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV20139.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.6e-05	166	188	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L++H+ H KZV20139.1 166 ACSECGEVFPKIESLEHHQAIrH 188 6******************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.141	165	193	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	165	188	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.92E-20	190	397	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.6E-9	191	397	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MALLTSIPDP ESRKKQQPKN AKPKKKHQIL VNHPPSSSWD QIKNLLACKQ IQDSKIHDPS 60 RHNGNATANH IYSYCNSTCT FRDVVHGNTR VAHRSDHSPE GSSVGQEIRS MSKRSTGHGL 120 VRSSGGGGAS AASSGRGMQL RKLSGCYECH SVDPSRYPFA RTTICACSEC GEVFPKIESL 180 EHHQAIRHAV SELGPDDSSR NIVEIIFKSS WLKKNNPICK IERILKVHNT KRTIQRFEDY 240 RDTVKTRATN SSKKNARCAA DGNELLRFHC AAITCSLGAR GSSSLCSSIP GCGVCTIIRH 300 GFEGNKVGGI RTTAGSGRAH DSLGGPGTRR AMLVCRVIAG RVKRVAEDAA VDEDGAASVA 360 AGSYDSVGGS GGIYSNLEEL HVFNPRAILS CFVVIYKALN S

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MALLTSIPDP ESRKKQQPKN AKPKKKHQIL VNHPPSSSWD QIKNLLACKQ IQDSKIHDPS  60
RHNGNATANH IYSYCNSTCT FRDVVHGNTR VAHRSDHSPE GSSVGQEIRS MSKRSTGHGL  120
VRSSGGGGAS AASSGRGMQL RKLSGCYECH SVDPSRYPFA RTTICACSEC GEVFPKIESL  180
EHHQAIRHAV SELGPDDSSR NIVEIIFKSS WLKKNNPICK IERILKVHNT KRTIQRFEDY  240
RDTVKTRATN SSKKNARCAA DGNELLRFHC AAITCSLGAR GSSSLCSSIP GCGVCTIIRH  300
GFEGNKVGGI RTTAGSGRAH DSLGGPGTRR AMLVCRVIAG RVKRVAEDAA VDEDGAASVA  360
AGSYDSVGGS GGIYSNLEEL HVFNPRAILS CFVVIYKALN S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV20139.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074673.1	0.0	uncharacterized protein LOC105159339 isoform X2
TrEMBL	A0A2Z7ALR9	0.0	A0A2Z7ALR9_9LAMI; Nucleic acid binding protein
STRING	XP_006473648.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5195	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-149	C2H2-like zinc finger protein