PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 182aa MW: 19774.1 Da PI: 8.1266

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV19366.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.8	6.5e-42	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C +apyfp e+p kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ KZV19366.1 11 PCAACKFLRRKCLSGCNFAPYFPPEEPTKFANVHKIFGASNVSKLLNEILPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLHLQKELDATNA 109 7*********************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.53	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-41	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MASSSNHSNP PCAACKFLRR KCLSGCNFAP YFPPEEPTKF ANVHKIFGAS NVSKLLNEIL 60 PHQREDAVNS LAYEAEARLK DPVYGCVGAI SVLQRQVLHL QKELDATNAD LMRYASNENT 120 SSFNHIPINR VQNRNKNNLG RRGNSDYGAP AGGSSLDPDS GFCFPYPSPW FDNPSGGGLG 180 SG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-63	2	128	2	128	LOB family transfactor Ramosa2.1
5ly0_B	5e-63	2	128	2	128	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV19366.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097516.1	6e-80	LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	3e-68	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A2Z7AJP8	1e-132	A0A2Z7AJP8_9LAMI; Protein LATERAL ORGAN BOUNDARIES-like
STRING	XP_009597524.1	3e-77	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-70	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]